jgreener64

MRC Laboratory of Molecular BiologyCambridge, UK

Pinned Repositories

BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Language:Julia88 10 1522
progres
Fast protein structure searching or your money back
Language:Python69 3 23
allopred
Predict allosteric pockets on proteins
Language:Python15 2 06
Bio3DView.jl
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Language:Julia33 3 97
mmterm
View proteins and trajectories in the terminal
Language:Python103 4 38
pdb-benchmarks
Benchmarking common tasks on proteins in various languages and packages
Language:Python40 5 26
ProteinEnsembles.jl
Generate and perturb protein structural ensembles using the ExProSE algorithm
Language:Julia22 3 34
Molly.jl
Molecular simulation in Julia
Language:Julia368 17 6151
cgdms
Differentiable molecular simulation of proteins with a coarse-grained potential
Language:Python52 8 14
DMPfold2
Fast and accurate protein structure prediction
Language:Python47 5 711

jgreener64's Repositories

jgreener64/mmterm
View proteins and trajectories in the terminal
Language:Python103 4 38
jgreener64/pdb-benchmarks
Benchmarking common tasks on proteins in various languages and packages
Language:Python40 5 26
jgreener64/Bio3DView.jl
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Language:Julia33 3 97
jgreener64/ProteinEnsembles.jl
Generate and perturb protein structural ensembles using the ExProSE algorithm
Language:Julia22 3 34
jgreener64/allopred
Predict allosteric pockets on proteins
Language:Python15 2 06
jgreener64/julia-anti-patterns
Learning what to do in Julia by learning what not to do in Julia
Language:Ruby1 2 0
jgreener64/LennardJones.jl
Molecular dynamics simulation of a simple Lennard Jones system
Language:Julia1 2 01
jgreener64/alphafold_pytorch
An implementation of the DeepMind's AlphaFold based on PyTorch for research
Language:Python1 0
jgreener64/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
1 0
jgreener64/Bio.jl
Bioinformatics and Computational Biology Infrastructure for Julia
Language:Julia2 0
jgreener64/BioFmtSpecimens
A collection of bioinformatics file format specimens to test against
Language:Roff2 0
jgreener64/biopython
Official git repository for Biopython (converted from CVS)
Language:Python2 0
jgreener64/BioSequences.jl
Biological sequences for the julia language
Language:Julia2 0
jgreener64/DiffEqCallbacks.jl
A library of useful callbacks for hybrid scientific machine learning (SciML) with augmented differential equation solvers
Language:Julia1 0
jgreener64/DiffEqDocs.jl
Documentation for the DiffEq differential equations and scientific machine learning (SciML) ecosystem
Language:TeX1 0
jgreener64/Enzyme
High-performance automatic differentiation of LLVM and MLIR.
Language:LLVM0 0
jgreener64/Enzyme.jl
Julia bindings for the Enzyme automatic differentiator
Language:Julia0 0
jgreener64/files
Random things I need a public link for
1 0
jgreener64/jgreener64.github.io
My personal website
Language:SCSS2 0
jgreener64/julia
The Julia Programming Language
Language:Julia0 0
jgreener64/julialang.github.com
Julia Project web site
Language:Jupyter Notebook2 0
jgreener64/JuliaMolSim.github.io
The website of the JuliaMolSim organisation
Language:JavaScript1 0
jgreener64/model-zoo
Please do not feed the models
Language:Julia2 0
jgreener64/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
Language:C++1 0
jgreener64/OrdinaryDiffEq.jl
High performance differential equation solvers for ordinary differential equations, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)
Language:Julia1 0
jgreener64/phd_thesis
My PhD thesis from Imperial College London
Language:TeX2 0
jgreener64/python-anti-patterns
An open collection of Python anti-patterns and "worst practices".
2 0
jgreener64/www.julialang.org
Julia Project website
Language:Jupyter Notebook1 0
jgreener64/zoomy
Lightweight VanillaJS plugin for zooming images on hover
Language:JavaScript2 0
jgreener64/Zygote.jl
Intimate Affection Auditor
Language:Julia1 0