/ProteinSecondaryStructures.jl

Wrapper to protein secondary structure calculation packages

Primary LanguageJuliaMIT LicenseMIT

Stable Tests Aqua QA

ProteinSecondaryStructures.jl

This package parses STRIDE and DSSP secondary structure prediction outputs, to make them convenient to use from Julia, particularly for the analysis of MD simulations.

Documentation

Go to: https://BioJulia.github.io/ProteinSecondaryStructures.jl

Citations

If you use the STRIDE algorithm for secondary structure prediction, please cite:

  • Frishman,D & Argos,P. (1995) Knowledge-based secondary structure assignment. Proteins: structure, function and genetics, 23, 566-579.
  • Kabsch,W. & Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22: 2577-2637.

If you use the DSSP algorithm for secondary structure prediction, please cite:

  • Joosten RP, te Beek TAH, Krieger E, Hekkelman ML, Hooft RWW, Schneider R, Sander C, Vriend A series of PDB related databases for everyday needs. Nuc. Acids Res. 2010; 39:D411-D419.
  • Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983; 22:2577-2637.