Pinned Repositories
acarafat
AlphaDefensin
Some python scripts created for sequence mining during alpha-defensin evolutionary analysis project
auto_CAMP
AMP prediction using CAMP webserver: automation, pattern matching and scale-up
BioinfUtil
Regularly used bioinformatics script for different purposes
competition_experiment
DiffLogo_Scripts
Implementation of DiffLogo in R
fast_mathjax
Superfast MathJax-Latex Plugin for Wordpress
subtractive_analysis
Paralog and ortholog filtering
tangler
Create Simple Tanglegram in R
beav
BEAV: Bacterial Element Annotation reVamped
acarafat's Repositories
acarafat/BioinfUtil
Regularly used bioinformatics script for different purposes
acarafat/tangler
Create Simple Tanglegram in R
acarafat/subtractive_analysis
Paralog and ortholog filtering
acarafat/DiffLogo_Scripts
Implementation of DiffLogo in R
acarafat/fast_mathjax
Superfast MathJax-Latex Plugin for Wordpress
acarafat/acarafat
acarafat/AlphaDefensin
Some python scripts created for sequence mining during alpha-defensin evolutionary analysis project
acarafat/auto_CAMP
AMP prediction using CAMP webserver: automation, pattern matching and scale-up
acarafat/bioconda-recipes
Conda recipes for the bioconda channel.
acarafat/ChIP-Seq_project1_gen242
acarafat/competition_experiment
acarafat/newton_calculator
acarafat/clustSub
Formatting and summerizing mutations
acarafat/coursera-deep-learning-specialization
Notes, programming assignments and quizzes from all courses within the Coursera Deep Learning specialization offered by deeplearning.ai: (i) Neural Networks and Deep Learning; (ii) Improving Deep Neural Networks: Hyperparameter tuning, Regularization and Optimization; (iii) Structuring Machine Learning Projects; (iv) Convolutional Neural Networks; (v) Sequence Models
acarafat/epidemic_haplotypes
acarafat/fastqviz
acarafat/Genotype_clade_visualizer
acarafat/mutational-stability-study
Codes I use during mutational stability studies
acarafat/Phylogeo_utilities
Some commonly used scripts during phylogeography analysis
acarafat/projectGen220
Bradyrhizobium genome analysis for GEN220 project
acarafat/pyCirclize
Circular visualization in Python (Circos Plot, Chord Diagram)
acarafat/split_multifasta
Split a file containing multiple fasta sequences into individual files containing multiple fasta file
acarafat/symbioUtil
Often used R functions to analyze plant harvest data
acarafat/tutorials