milot-mirdita

@soedinglab Munich

Pinned Repositories

dweomery
Dweomery – Pathfinder Spell Browser and Cards
Language:Vue2 3 00
pulchra-wasm
Language:C2 3 00
tmalign-wasm
Language:C++8 3 02
metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
Language:C180 9 9023
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C1.5k 31 851202
MMseqs2-App
MMseqs2 app to run on your workstation or servers
Language:Vue67 7 3920
spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
Language:C37 8 144
ColabFold
Making Protein folding accessible to all!
Language:Jupyter Notebook2k 48 563507
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
Language:C853 18 355103

milot-mirdita's Repositories

milot-mirdita/tmalign-wasm
Language:C++8 3 02
milot-mirdita/dweomery
Dweomery – Pathfinder Spell Browser and Cards
Language:Vue2 3 00
milot-mirdita/pulchra-wasm
Language:C2 3 00
milot-mirdita/biorxiv_bioinfo_feed2toot
1 3 00
milot-mirdita/academic-website
Language:TeX3 0
milot-mirdita/af-msa-training
Language:Shell1 0
milot-mirdita/alphafold
AlphaFold2 with ColabFold patches
Language:Python2 0
milot-mirdita/alphafold3-pytorch-lightning-hydra
Implementation of AlphaFold 3 with the PyTorch Lightning + Hydra
Language:Python0 0
milot-mirdita/binary-upload-server
Language:JavaScript3 0
milot-mirdita/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell3 0
milot-mirdita/block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
Language:Jupyter Notebook2 0
milot-mirdita/cameo-responder
Language:Shell3 0
milot-mirdita/candle
Minimalist ML framework for Rust
Language:Rust1 0
milot-mirdita/Candle-ProstT5
Language:Rust0 0
milot-mirdita/ColabFold
Making Protein folding accessible to all via Google Colab!
Language:Jupyter Notebook2 0
milot-mirdita/dssp-wasm
DSSP port to WebAssembly
Language:C++2 0
milot-mirdita/Expr-JIT
I named it JIT but it's actually a stack-based bytecode interpreter!
Language:C2 0
milot-mirdita/foldcomp
Compressing protein structures effectively with torsion angles
Language:C++2 0
milot-mirdita/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
Language:C2 0
milot-mirdita/gemmi
macromolecular crystallography library and utilities
Language:C++0 0
milot-mirdita/localcolabfold
ColabFold on your local PC
Language:Python1 0
milot-mirdita/MakingPfamSDB
This GitHub repository is for making the Pfam seeds structure database (PfamSDB) by cutting the related full-length structures on their domain borders.
Language:Python1 0
milot-mirdita/mmseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C3 02
milot-mirdita/MMseqs2-App
MMseqs2 app to run on your workstation or servers
Language:JavaScript2 0
milot-mirdita/ngl
WebGL protein viewer
Language:TypeScript2 0
milot-mirdita/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Language:Python2 0
milot-mirdita/ProstT5
Bilingual Language Model for Protein Sequence and Structure
Language:Jupyter Notebook1 0
milot-mirdita/ProstT5-CTranslate2
Fast inference engine for Transformer models
Language:C++0 0
milot-mirdita/responsiblereview
Language:HTML3 02
milot-mirdita/transannot
Language:C2 01