Pinned Repositories
biorxiv_bioinfo_feed2toot
dweomery
Dweomery – Pathfinder Spell Browser and Cards
pulchra-wasm
tmalign-wasm
metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
MMseqs2-App
MMseqs2 app to run on your workstation or servers
spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
ColabFold
Making Protein folding accessible to all!
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
milot-mirdita's Repositories
milot-mirdita/tmalign-wasm
milot-mirdita/dweomery
Dweomery – Pathfinder Spell Browser and Cards
milot-mirdita/pulchra-wasm
milot-mirdita/biorxiv_bioinfo_feed2toot
milot-mirdita/academic-website
milot-mirdita/alphafold
AlphaFold2 with ColabFold patches
milot-mirdita/alphafold3-pytorch-lightning-hydra
Implementation of AlphaFold 3 with the PyTorch Lightning + Hydra
milot-mirdita/binary-upload-server
milot-mirdita/bioconda-recipes
Conda recipes for the bioconda channel.
milot-mirdita/block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
milot-mirdita/cameo-responder
milot-mirdita/candle
Minimalist ML framework for Rust
milot-mirdita/Candle-ProstT5
milot-mirdita/ColabFold
Making Protein folding accessible to all via Google Colab!
milot-mirdita/dssp-wasm
DSSP port to WebAssembly
milot-mirdita/Expr-JIT
I named it JIT but it's actually a stack-based bytecode interpreter!
milot-mirdita/foldcomp
Compressing protein structures effectively with torsion angles
milot-mirdita/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
milot-mirdita/gemmi
macromolecular crystallography library and utilities
milot-mirdita/horus
HTTP request logger for Golang
milot-mirdita/localcolabfold
ColabFold on your local PC
milot-mirdita/MakingPfamSDB
This GitHub repository is for making the Pfam seeds structure database (PfamSDB) by cutting the related full-length structures on their domain borders.
milot-mirdita/mmseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
milot-mirdita/MMseqs2-App
MMseqs2 app to run on your workstation or servers
milot-mirdita/ngl
WebGL protein viewer
milot-mirdita/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
milot-mirdita/ProstT5
Bilingual Language Model for Protein Sequence and Structure
milot-mirdita/ProstT5-CTranslate2
Fast inference engine for Transformer models
milot-mirdita/responsiblereview
milot-mirdita/transannot