Pinned Repositories
BaMMmotif2
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
CCMpred
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
hh-suite
Remote protein homology detection suite.
metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
MMseqs2-App
MMseqs2 app to run on your workstation or servers
plass
sensitive and precise assembly of short sequencing reads
spacedust
Discovery of conserved gene clusters in multiple genomes
spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
WIsH
Predict prokaryotic host for phage metagenomic sequences
Söding Lab's Repositories
soedinglab/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
soedinglab/hh-suite
Remote protein homology detection suite.
soedinglab/metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
soedinglab/plass
sensitive and precise assembly of short sequencing reads
soedinglab/CCMpred
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
soedinglab/MMseqs2-App
MMseqs2 app to run on your workstation or servers
soedinglab/spacedust
Discovery of conserved gene clusters in multiple genomes
soedinglab/WIsH
Predict prokaryotic host for phage metagenomic sequences
soedinglab/spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
soedinglab/pdbx
pdbx is a parser module in python for structures of the protein data bank in the mmcif format
soedinglab/prosstt
PRObabilistic Simulations of ScRNA-seq Tree-like Topologies
soedinglab/CCMgen
soedinglab/transannot
TransAnnot - a fast transcriptome annotation pipeline
soedinglab/b-lore
Bayesian multiple logistic regression for GWAS meta-analysis
soedinglab/BaMMmotif2
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
soedinglab/tejaas
Tejaas - a tool for discovering trans-eQTLs
soedinglab/MAGmax
From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax
soedinglab/PMGen
peptide-MHC modeling, binding prediction, and protein design.
soedinglab/binning_benchmarking
soedinglab/McDevol
soedinglab/bipartite_motif_finder
BMF: Bipartite Motif Finder
soedinglab/CoCo
Consensus Correction
soedinglab/MMseqs2-Regression
MMseqs2 Regression Testing
soedinglab/art_marzooplclk
Accompanying repository for the publication "RNA sequencing indicates widespread conservation of circadian clocks in marine zooplankton"
soedinglab/bmf-paper
Notebooks to reproduce the analyses in BMF manuscript
soedinglab/bmf-webserver
Web server for Bipartite Motif Finder (BMF)
soedinglab/cooperative_rbp
soedinglab/contactpred-felsenstein
Felsenstein implementation for phylogeny correction
soedinglab/hhdatabase_pfam
Scripts to generate the pfam database for hh-suite
soedinglab/metaeuk-regression
Regression test suite for MetaEuk