Steinegger Lab

Steinegger Lab Github repositories

Korea, South

Pinned Repositories

colabfold-protocol
ColabFold protocol
Language:Jupyter Notebook46 5 28
conterminator
Detection of incorrectly labeled sequences across kingdoms
Language:C80 5 237
foldcomp
Compressing protein structures effectively with torsion angles
Language:C++164 5 4414
foldmason
Multiple Protein Structure Alignment at Scale with FoldMason
Language:C144 5 1214
foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
Language:C852 18 355103
foldseek-analysis
Scripts to benchmark and train foldseek
Language:Jupyter Notebook33 3 54
Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Language:C++123 6 3710
Metabuli-App
Language:HTML23 1 12
petasearch
🧬 Efficient parallelized peta-scale protein database search
Language:C42 3 140
ufcg
UFCG: Universal Fungal Core Genes
Language:Java32 3 280

Steinegger Lab's Repositories

steineggerlab/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
Language:C852 18 355103
steineggerlab/foldcomp
Compressing protein structures effectively with torsion angles
Language:C++164 5 4414
steineggerlab/foldmason
Multiple Protein Structure Alignment at Scale with FoldMason
Language:C144 5 1214
steineggerlab/Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Language:C++123 6 3710
steineggerlab/conterminator
Detection of incorrectly labeled sequences across kingdoms
Language:C80 5 237
steineggerlab/colabfold-protocol
ColabFold protocol
Language:Jupyter Notebook46 5 28
steineggerlab/petasearch
🧬 Efficient parallelized peta-scale protein database search
Language:C42 3 140
steineggerlab/foldseek-analysis
Scripts to benchmark and train foldseek
Language:Jupyter Notebook33 3 54
steineggerlab/ufcg
UFCG: Universal Fungal Core Genes
Language:Java32 3 280
steineggerlab/Metabuli-App
Language:HTML23 1 12
steineggerlab/folddisco
Fast indexing and search of discontinuous motifs in protein structures
Language:Rust15 3 51
steineggerlab/unicore
Universal and efficient core gene phylogeny with Foldseek and ProstT5
Language:Rust14 3 01
steineggerlab/alphafold
Open source code for AlphaFold.
Language:Python11 1 09
steineggerlab/afdb-clusters-analysis
Scripts to generate and analyze afdb clusters
Language:Jupyter Notebook10 3 10
steineggerlab/mmseqs2-gpu-analysis
Language:Shell9
steineggerlab/probeit
Design capture probes
Language:Python9 4 02
steineggerlab/SeekRank
Rank homologous protein sequences based on a regressor trained on experimental measures
Language:Jupyter Notebook6 3 0
steineggerlab/foldcomp-analysis
Language:C3 4 00
steineggerlab/foldseek-regression
Regression test for foldseek
Language:Shell3 3 02
steineggerlab/afdb-clusters-web
Language:Jupyter Notebook2 3 22
steineggerlab/bfvd-analysis
Big Fantastic Virus Database (BFVD): Code used for analyses
Language:Shell1
steineggerlab/foldmason-analysis
Language:Shell1 2 0
steineggerlab/foldseek-multimer-analysis
Language:Shell1 2 01
steineggerlab/Metabuli-temp
Taxonomical classifier using AD k-mer
Language:C++1 1 0
steineggerlab/ufcg-web
UFCG website
Language:HTML1 2 00
steineggerlab/Metabuli-regression
Regression tests for Metabuli
Language:Shell3 0
steineggerlab/petasearch-regression
Language:C++3 0
steineggerlab/steineggerlab.github.io
Steinegger Lab page
Language:HTML3 0