steineggerlab/ufcg

Issues

• UFCG dependency issues from AUGUSTUS and gsl issues

  #30 opened 12 days ago by Changwanseo
  0

• ITS genes not being found

  #14 opened a year ago by rissidaniel
  11

• ERROR! Tree file of gene COX2 not found : trees2/aligned_COX2_pro.zZ.fasta.treefile

  #21 opened a year ago by salvatierra8
  15

• NUC only uses ITS

  #29 opened 2 months ago by JWDebler
  4

• Metadata file checking fails when .tsv is symbolic link

  #28 opened 2 months ago by jackscanlan
  2

• issue with AGUSTUS

  #27 opened 3 months ago by Keevai09
  4

• Could not initialize class envs.config.GenericConfig

  #15 opened a year ago by jungleblack007
  5

• ERROR! Tree file of gene CMD1 not found : trees2/aligned_COX2_pro.zZ.fasta.treefile

  #26 opened 6 months ago by Burythelightwithin
  1

• Can you add a new gene in the list and run the whole analysis from profile to tree?

  #25 opened 6 months ago by kusandeep
  1

• v1.0.2 augustus issue

  #3 opened 2 years ago by Sebastien-Raguideau
  6

• Unable to install ufcg by conda

  #23 opened a year ago by jun-yeong-heo
  2

• Error! metadata file improperly formatted

  #22 opened a year ago by Ellouzlab
  2

• How to resolve warning "Failed to detect environment path" and error "AUGUSTUS-PPX config file is absent or improperly formatted."

  #16 opened a year ago by Changwanseo
  2

• [Done] Add sensitivity option for `profile` module

  #19 opened a year ago by endixk
  4

• ERROR! java.io.IOException: Failed to list contents of /tmp/netdata-updater-hAcEdu4h9c

  #20 opened a year ago by Truongphi20
  1

• Bugs on deleting temporary files

  #18 opened a year ago by Changwanseo
  1

• ufcg train: .hmm files empty, markers missing from assemblies

  #17 opened a year ago by alisqq
  4

• absence of `mmseqs` binary not being properly resolved by the interactive `profile` module

  #9 opened a year ago by endixk
  0

• Checkpoint feature or `tree` and `align` modules does not work properly

  #12 opened a year ago by endixk
  0

• Nucleotide alignment with invalid nucleotide "X"

  #13 opened a year ago by Changwanseo
  1

• how to change busco databases?

  #10 opened a year ago by jungleblack007
  4

• Java OutOfBoundsException on some genomes

  #8 opened 2 years ago by BrigidaGallone
  1

• single- vs. multi-copy genes in align module

  #4 opened 2 years ago by BrigidaGallone
  4

• ERROR! No internet connection

  #7 opened 2 years ago by yye88
  5

• Augustus takes 420G ram +59h

  #5 opened 2 years ago by Sebastien-Raguideau
  2

• ERROR! java.io.IOException: Unable to delete file: .nfs

  #2 opened 2 years ago by Sebastien-Raguideau
  4

• [Question] Train module issue

  #6 opened 2 years ago by llk578496
  1

• Applying ufcg to metagenomes

  #1 opened 2 years ago by Sebastien-Raguideau
  2