JWDebler
Molecular Biologist / part time Bioinformatition at the Centre for Crop and Disease Managment, Curtin University, Perth Australia
Curtin UniversityPerth, Australia
Pinned Repositories
bioinformatics
bifo scripts
docker_bonito
bonito basecaller docker image with cuda
docker_guppy
A dockerfile to build the latest version of GPU guppy basecaller
docker_megalodon_guppy
Megalodon and Guppy GPU
nanopore_kit14_assembly
fungal genome assembly from Q20+ nanopore reads
nextflow-annotate
Workflows I find helpful for fungal genome annotation
nf-assembly
Assembly and basic annotation of Illumina short reads
nf-genomeCoverage
orthofinder_extractor
Extract species specific orthogroups from Orthofinder results
JWDebler's Repositories
JWDebler/orthofinder_extractor
Extract species specific orthogroups from Orthofinder results
JWDebler/nanopore_kit14_assembly
fungal genome assembly from Q20+ nanopore reads
JWDebler/docker_bonito
bonito basecaller docker image with cuda
JWDebler/docker_megalodon_guppy
Megalodon and Guppy GPU
JWDebler/bioinformatics
bifo scripts
JWDebler/docker_guppy
A dockerfile to build the latest version of GPU guppy basecaller
JWDebler/nextflow-annotate
Workflows I find helpful for fungal genome annotation
JWDebler/nf-assembly
Assembly and basic annotation of Illumina short reads
JWDebler/nf-genomeCoverage
JWDebler/2018-10-15-annotations
Annotation scripts for several ascochyta isolates
JWDebler/Augustus
Genome annotation with AUGUSTUS
JWDebler/biocode
Bioinformatics code libraries and scripts
JWDebler/contiGC
determine per contig / scaffold GC content
JWDebler/docker-REPET
The REPET package in a container.
JWDebler/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
JWDebler/effector_selection
Python script that scrapes the output of deepsig, effectorP, Interproscan (including SignalP) and selects effector candidates
JWDebler/fasta2audio
make fasta files audible
JWDebler/FixFAST5
Fixing Oxford Nanopore FAST5 files which are missing entries
JWDebler/interproscan_parse
Python3 script to parse interproscan output for keywords and create a fasta file with hits
JWDebler/judge_timer
A little Arduino timer for judging indoor skydiving
JWDebler/nanopore_LSK109_assembly
Assembly pipeline for Nanopore LSK109 chemistry on R9 flowcells
JWDebler/nf-augustus_with_RNASeq
JWDebler/nf-busco
JWDebler/nf-occultercut
compare and plot GC content of genomes
JWDebler/nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
JWDebler/nf-repeats
annotate repeats
JWDebler/pante2
🍄 🧬An (improved) pipeline for predicting and masking transposable elements in multiple fungal genomes.
JWDebler/predector
Effector prediction pipeline based on protein properties.
JWDebler/SporeCounter
Android App that lets you count spores (or other cells) under the microscope and then calculates amount per mL.