marker-gene-analysis

There are 8 repositories under marker-gene-analysis topic.

  • nsalomonis/altanalyze

    AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

    Language:Python100165430

  • Russel88/DAtest

    Compare different differential abundance and expression methods

    Language:R508239

  • steineggerlab/ufcg

    UFCG: Universal Fungal Core Genes

    Language:Java323280

  • mikemc/metacal

    Metagenomics calibration R package

    Language:R185244

  • itsmisterbrown/microfiltR

    accessory functions for processing microbial community data

    Language:R122311

  • wshuai294/PStrain

    Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.

    Language:Shell82152

  • mikemc/mgs-bias-manuscript

    Analysis for McLaren, Willis, and Callahan (2019)

    Language:R41153

  • jungsoh/high-throughput-sequence-data-handling-course

    Material used for a course on handling high-throughput genomic data handling, covering DNA sequence assembly, RNA-seq data analysis, metagenomics, and read alignment

    Language:HTML10