Pinned Repositories
freyr
A Nextflow-based metabarcoding pipeline for agricultural biosecurity and biosurveillance
ampliseq_v2.8.0
Amplicon sequencing analysis workflow using DADA2 and QIIME2; written in Nextflow workflow language
fungal-phylo
Phylogenomics pipeline for entomopathogenic fungi (EPF)
jackscanlan.github.io
locus-pocus
Tools for finding and extracting barcoding and other taxonomically informative loci
nf_testing
A place to test Nextflow pipeline code before using it in other projects
piperline-docker
Creates Docker containers for the classic 'piperline' metabarcoding pipeline
piperline-functions
R functions used in the R-implementation of the pipeRline metabarcoding pipeline
nextflow
A DSL for data-driven computational pipelines
ufcg
UFCG: Universal Fungal Core Genes
jackscanlan's Repositories
jackscanlan/ampliseq_v2.8.0
Amplicon sequencing analysis workflow using DADA2 and QIIME2; written in Nextflow workflow language
jackscanlan/fungal-phylo
Phylogenomics pipeline for entomopathogenic fungi (EPF)
jackscanlan/jackscanlan.github.io
jackscanlan/locus-pocus
Tools for finding and extracting barcoding and other taxonomically informative loci
jackscanlan/nf_testing
A place to test Nextflow pipeline code before using it in other projects
jackscanlan/piperline-docker
Creates Docker containers for the classic 'piperline' metabarcoding pipeline
jackscanlan/piperline-functions
R functions used in the R-implementation of the pipeRline metabarcoding pipeline