c-mertes

aberrant-expression-pipeline

absplice-vep

The VEP plugin for AbSplice prediction

auks

Kerberos credential support for batch environments

autoCorrection

The autoencoder implementation for the OUTRIDER package

BiocCheck

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

FRASER

FRASER - Find RAre Splicing Events in RNA-seq

RNAseq-ASHG19

RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows

c-mertes/FRASER

FRASER - Find RAre Splicing Events in RNA-seq

c-mertes/RNAseq-ASHG19

RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows

c-mertes/BiocCheck

c-mertes/aberrant-expression-pipeline

c-mertes/absplice-vep

The VEP plugin for AbSplice prediction

c-mertes/auks

Kerberos credential support for batch environments

c-mertes/autoCorrection

The autoencoder implementation for the OUTRIDER package

c-mertes/bioconda-recipes

Conda recipes for the bioconda channel.

c-mertes/bioconda-utils

Utilities for building and managing bioconda recipes

c-mertes/BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

c-mertes/davidaknowles.github.io

Github Pages homepage

c-mertes/docker_drop

c-mertes/docker_gene_prio

c-mertes/drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

c-mertes/drop_demo_data

c-mertes/gcb_ngs_harmonisation_workshop

Materials for NGS Harmonization Workshop at GCB 2023

c-mertes/GenoGAM

c-mertes/GenomicAlignments

Representation and manipulation of short genomic alignments

c-mertes/ggpval

Add statistical test or annotation to your ggplot2 plots

c-mertes/kipoi

Kipoi's model zoo API

c-mertes/modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

c-mertes/nf-DROP-pipeline

c-mertes/OUTRIDER

OUTRIDER: OUTlier in Rna-seq fInDER is a R-based framework to find aberrantly expressed genes in RNA-seq samples

c-mertes/rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

c-mertes/rnaseq-methods

c-mertes/SPOT

SPlicing Outlier deTection

c-mertes/test-ci

Repo to test travis and appveyor pipelines with R packages

c-mertes/testpipeline

A small example pipeline used to test new nf-core infrastructure and common code.

c-mertes/tMAE

c-mertes/wBuild

R project report builder