Pinned Repositories
AnanseScanpy
Implementation of scANANSE for Scanpy objects in Python
bash_course
bioconda-recipes
Conda recipes for the bioconda channel.
TSA
Time-series alignment for bulk RNA-seq
ANANSE
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
anansnake
Automate long-running ANANSE analyses with snakemake
genomepy
genes and genomes at your fingertips
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
siebrenf's Repositories
siebrenf/AnanseScanpy
Implementation of scANANSE for Scanpy objects in Python
siebrenf/bash_course
siebrenf/bioconda-recipes
Conda recipes for the bioconda channel.
siebrenf/TSA
Time-series alignment for bulk RNA-seq
siebrenf/bioconda-utils
Utilities for building and managing bioconda recipes
siebrenf/conda-build
Commands and tools for building conda packages
siebrenf/defopt-feedstock
A conda-smithy repository for defopt.
siebrenf/ggd-recipes
conda recipes for genomic data
siebrenf/goatools
Python library to handle Gene Ontology (GO) terms
siebrenf/learnr
Interactive Tutorials with R Markdown
siebrenf/pyclustree
siebrenf/pyfaidx
Efficient pythonic random access to fasta subsequences
siebrenf/scanpy
Single-cell analysis in Python. Scales to >1M cells.