vanheeringen-lab/gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
PythonMIT
Issues
- 1
Cannot install package
#320 opened by DrNamwob - 1
Maelstrom: failing during MultiTaskLasso
#319 opened by shaunmahony - 0
- 1
- 0
Supporting for metagenomic data
#317 opened by OtaviaW - 0
Gimmemotif motif scan 'score' metric
#316 opened by momur - 1
Exception on differential enrichment
#312 opened by Mitmischer - 0
Gimme maelstrom didn't work with custom pfm file
#314 opened by Francis3209 - 0
Incompatibility with certain common PWM files
#313 opened by Mitmischer - 0
Exception on motif enrichment analysis
#311 opened by Mitmischer - 6
gimme motif2factors: No Orthologs Found for any factor in my custom organism genome
#307 opened by apposada - 0
FR: support pandas 2
#306 opened by siebrenf - 22
Bioconda installation
#271 opened by ChemaMD - 5
Segmentation fault on scan_all function
#302 opened by nikolamilosevic86 - 2
Error in creating statistics report "_translate() takes 1 positional argument but 3 were given"
#242 opened by sqhang - 1
conda install improvements
#250 opened by siebrenf - 8
- 1
Push most recent version (0.17.2) to gimmemotifs
#290 opened by roskamsh - 0
gimme threshold error
#287 opened by siebrenf - 0
Odd behaviour using --fraction
#284 opened by IanCodes - 1
xgboost dependency
#286 opened by JGASmits - 1
ConvergenceWarning
#299 opened by siebrenf - 0
FutureWarning
#298 opened by siebrenf - 1
PerformanceWarning
#297 opened by siebrenf - 1
set_genomes function in Scanner() cannot be passed additional arguments for class Genome
#285 opened by roskamsh - 1
clustered motifs for invertebrates
#282 opened by perinom - 1
Questions about GimmeMotifs output
#280 opened by paumarc - 2
What does inferred mean in combined.motif2factors?
#279 opened by roryk - 1
- 0
- 2
Error in maelstrom
#274 opened by shaunmahony - 2
error when using CIS-BP database for gimme match
#273 opened by lynnyummy - 2
set readthedocs default branch to master
#263 opened by siebrenf - 0
The input files for motif2factors
#270 opened by lynnyummy - 1
update setup.py
#264 opened by siebrenf - 1
JASPAR2020_vertebrates error
#268 opened by gfudenberg - 0
docstrings for to_pfm
#267 opened by gfudenberg - 0
backgrounds don't adhere to npcus
#265 opened by siebrenf - 0
tool yamda not configured
#262 opened by siebrenf - 0
tool jaspar not configured
#261 opened by siebrenf - 1
plot_logo() seems to plot wrong logos with newer gimmemotifs versions
#256 opened by Maarten-vd-Sande - 1
MotifComparer metrics
#251 opened by hschult - 1
Report Metrics
#252 opened by MattGoulty - 1
Gimme Scan Not Functioning as Expected
#257 opened by vbchavali - 0
a custom size rather than fixed size
#253 opened by wbszhu - 5
MotifComparer.get_all_scores() error
#243 opened by hschult - 0
- 0
- 0
Why don't all rows have names?
#241 opened by tzhu-bio - 0
direct and indirect
#240 opened by rojinsafavi