gfudenberg
Assistant Professor, Department of Quantitative and Computational Biology, University of Southern California. For more information see https://fudenberg.team
Pinned Repositories
basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
bioconda-recipes
Conda recipes for the bioconda channel.
bioframe
Pandas utilities for tab-delimited and other genomic data files
cooler
A cool place to store your Hi-C
cooltools
The tools for your .cool's
deep-learning-genomics-primer
Contains files for the deep learning in genomics primer.
hanabi-live
A web server that allows people to play Hanab, a cooperative card game of logic and reasoning.
Hi-ComparmentHMM
Analysis of Chip-seq using Hi-C features
looplib
A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
open2c_examples
gfudenberg's Repositories
gfudenberg/basenji
Sequential regulatory activity predictions with deep convolutional neural networks.
gfudenberg/bioconda-recipes
Conda recipes for the bioconda channel.
gfudenberg/bioframe
Pandas utilities for tab-delimited and other genomic data files
gfudenberg/cooler
A cool place to store your Hi-C
gfudenberg/cooltools
The tools for your .cool's
gfudenberg/deep-learning-genomics-primer
Contains files for the deep learning in genomics primer.
gfudenberg/hanabi-live
A web server that allows people to play Hanab, a cooperative card game of logic and reasoning.
gfudenberg/Hi-ComparmentHMM
Analysis of Chip-seq using Hi-C features
gfudenberg/looplib
A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
gfudenberg/open2c_examples
gfudenberg/polychrom
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
gfudenberg/qbio577_fall2022