roskamsh

cfRNA-seq-pipeline-Ngo-manuscript-2019

This pipeline contains the data processing steps used for Thuy Ngo's 2019 cell-free RNA manuscript

BetaVAEMultImpute

ChIP-seq-pipeline

This is a pipeline to run basic Chromatin immunoprecipitation sequencing analysis for single-end or paired-end data.

Co-culture-Bulk-RNA-seq-pipeline

This is a pipeline to run basic RNA-seq analysis for single-end data.

ld-clump

negative-control-genomicc

pipeline-TCGA_GTEx-cfRNA

targene-pipeline

Nextflow pipeline for Targeted-Learning of genetic effects

TargeneCore.jl

Core Functionalities for TL-GWAS

gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

roskamsh/BetaVAEMultImpute

roskamsh/pipeline-TCGA_GTEx-cfRNA

roskamsh/ChIP-seq-pipeline

This is a pipeline to run basic Chromatin immunoprecipitation sequencing analysis for single-end or paired-end data.

roskamsh/Co-culture-Bulk-RNA-seq-pipeline

This is a pipeline to run basic RNA-seq analysis for single-end data.

roskamsh/ld-clump

roskamsh/negative-control-genomicc