Pinned Repositories
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
BetaVAEMultImpute
ChIP-seq-pipeline
This is a pipeline to run basic Chromatin immunoprecipitation sequencing analysis for single-end or paired-end data.
Co-culture-Bulk-RNA-seq-pipeline
This is a pipeline to run basic RNA-seq analysis for single-end data.
ld-clump
lift-over-qtls
Repository to lift over QTLs required for bQTL-transactor runs
negative-control-genomicc
pipeline-TCGA_GTEx-cfRNA
wgs-vs-genotype-array-genomicc
This is a repository to identify potential batch effects between two cohorts, as the data-generation process was slightly different.
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
roskamsh's Repositories
roskamsh/BetaVAEMultImpute
roskamsh/pipeline-TCGA_GTEx-cfRNA
roskamsh/ChIP-seq-pipeline
This is a pipeline to run basic Chromatin immunoprecipitation sequencing analysis for single-end or paired-end data.
roskamsh/Co-culture-Bulk-RNA-seq-pipeline
This is a pipeline to run basic RNA-seq analysis for single-end data.
roskamsh/ld-clump
roskamsh/lift-over-qtls
Repository to lift over QTLs required for bQTL-transactor runs
roskamsh/negative-control-genomicc
roskamsh/wgs-vs-genotype-array-genomicc
This is a repository to identify potential batch effects between two cohorts, as the data-generation process was slightly different.