Pinned Repositories
cfDNA-UniFlow
Workflow for preprocessing cfDNA samples.
cfDNA_GCcorrection
bed_to_1hot
bedtools2
bedtools - the swiss army knife for genome arithmetic
sroener's Repositories
sroener/bed_to_1hot
sroener/bedtools2
bedtools - the swiss army knife for genome arithmetic
sroener/bioconda-recipes
Conda recipes for the bioconda channel.
sroener/cfDNA_GCcorrection
sroener/deepTools
Tools to process and analyze deep sequencing data.
sroener/ECCB2020
ECCB2020 tutorial: Using Deep Learning For Image and Sequence Analysis
sroener/CSAMA-labs_2024
laboratory materials for the Bressanone course
sroener/csaps
Cubic spline approximation (smoothing)
sroener/ECCB2021
sroener/eccb2022_sc_funcomics
Functional analysis of single-cell transcriptomics
sroener/ExPecto
sroener/fasta_one_hot_encoder
Simple python to lazily one-hot encode fasta files using multiple processes.
sroener/GCparagon
commandline tool for fast computation and correction of GC biases in WGS DNA datasets from liquid biopsy samples taking the fragment length into account
sroener/github-readme-stats
:zap: Dynamically generated stats for your github readmes
sroener/handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
sroener/machine-learning-mindmap
A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.
sroener/minimal_pypackage_template
Minimal cookiecutter template for Python packages
sroener/numerical-linear-algebra
Free online textbook of Jupyter notebooks for fast.ai Computational Linear Algebra course
sroener/shap
A game theoretic approach to explain the output of any machine learning model.
sroener/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
sroener/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
sroener/snakemake_tutorial
Snakemake tutorial based on the official documentation of snakemake
sroener/sroener
sroener/vscode-python
Python extension for Visual Studio Code