mr-c

common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

cwlprov

Profile for provenance research object of a CWL workflow run

cwltool

Common Workflow Language reference implementation

schema_salad

Semantic Annotations for Linked Avro Data

bioapi-linux

This is the reference implementation of BioAPI 1.1 for Linux. Note for bioinformaticians: hilariously I used to work in biometrics. This will be of no use to you and is essentially unmaintained. Cheers!

common-workflow-language

Repository for CWL Specfications

CWL-Quick-Start

Short demo of a cwl workflow

hive-cwl-examples

misc

shouldacite

Should you cite this software?

mr-c/ADIOS2

Next generation of ADIOS developed in the Exascale Computing Program

mr-c/atlarge-phd-thesis-template

A LaTeX template for creating beautiful PhD theses, originally created by TU Delft.

mr-c/basemap

Plot on map projections (with coastlines and political boundaries) using matplotlib

mr-c/black

The uncompromising Python code formatter

mr-c/bmtk

Brain Modeling Toolkit

mr-c/brian2

Brian is a free, open source simulator for spiking neural networks.

mr-c/bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

mr-c/cibuildwheel

🎡 Build Python wheels for all the platforms with minimal configuration.

mr-c/cnvkit

Copy number variant detection from targeted DNA sequencing

mr-c/cwl-example

mr-c/dev-platform-dask-gateway

Bootstraps a dask gateway deployment on minikube using skaffold

mr-c/dockstore-tool-md5sum

A very simple tool that just performs an md5sum

mr-c/emscripten

Emscripten: An LLVM-to-WebAssembly Compiler

mr-c/fastcluster

Fast hierarchical clustering routines for R and Python.

mr-c/fermi-lite

Standalone C library for assembling Illumina short reads in small regions

mr-c/fs

Provide cross platform file operations based on libuv.

mr-c/galaxy

Data intensive biology for everyone.

mr-c/mariadb-connector-python

MariaDB Connector/Python

mr-c/MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

mr-c/mypy

Optional static typing for Python

mr-c/parameters

:bar_chart: Computation and processing of models' parameters

mr-c/rhdf5

Package providing an interface between HDF5 and R

mr-c/rust-rocksdb

rust wrapper for rocksdb

mr-c/schema-salad-feedstock

A conda-smithy repository for schema-salad.

mr-c/simde

Implementations of SIMD instruction sets for systems which don't natively support them.

mr-c/snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

mr-c/sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets.

mr-c/spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

mr-c/sphinxcontrib-sass

Sphinx extension to compile sass to css in running sphinx-build

mr-c/toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.