sk-sahu

Bioinformatics Solution Architect, helping understand Genomics data

@lifebit-aiLondon

Pinned Repositories

BioShineR
Containerized Bioconductor and Shiny with Docker
Language:R1 1 00
cloudos
cloudos: An R package for the Lifebit CloudOS Platform
Language:Jupyter Notebook8 16 301
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Language:Nextflow183 129 147155
covid19-dashboard
Yet another covid19-dashboard
Language:HTML1 2 00
learn-R
Materials to learn R focused on Lab Biologist
Language:HTML2 2 01
PGRB
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
Language:Nextflow2 2 10
sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
Language:R40 3 89
sk-sahu.github.io
Personal Webpage https://sk-sahu.github.io
Language:SCSS2 1 00
Snakeflows
Collective Snakemake workflows for easy and reproducible NGS data analysis.
Language:Python5 2 01

sk-sahu's Repositories

sk-sahu/sig-bio-shiny
A standalone interactive application for detecting biological significance on a set of genes
Language:R40 3 89
sk-sahu/Snakeflows
Collective Snakemake workflows for easy and reproducible NGS data analysis.
Language:Python5 2 01
sk-sahu/learn-R
Materials to learn R focused on Lab Biologist
Language:HTML2 2 01
sk-sahu/PGRB
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
Language:Nextflow2 2 10
sk-sahu/sk-sahu.github.io
Personal Webpage https://sk-sahu.github.io
Language:SCSS2 1 00
sk-sahu/covid19-dashboard
Yet another covid19-dashboard
Language:HTML1 2 00
sk-sahu/EcoGEx
Arabidopsis EcoGEx (R-📦 + 🕸️-App)
Language:R1 2 11
sk-sahu/mamba
docker image for mamba - https://github.com/QuantStack/mamba
Language:Dockerfile1 2 0
sk-sahu/sigbio-shiny-slides
Language:HTML1 2 0
sk-sahu/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language:Nextflow
sk-sahu/bioconductor_docker_shiny
Bioconductor docker image with Shiny Server.
Language:Dockerfile2 0
sk-sahu/blog
Blogging site hosted on Netlify (https://sksahu-blog.netlify.com)
Language:HTML1 0
sk-sahu/code
Ready to use Gitpod/VScode IDE with Prebuilt Dev Environment
Language:Dockerfile2 01
sk-sahu/dc-genomics-workshop-testout
Language:HTML2 0
sk-sahu/form
A form deploy via gh-pages
Language:HTML2 0
sk-sahu/learn-python
This repository host a binder instance with few libraries installed for teaching purpose
Language:Jupyter Notebook2 0
sk-sahu/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Language:Nextflow1 0
sk-sahu/multi-omics-state-of-the-field
Analyses for "State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing"
Language:Jupyter Notebook1 0
sk-sahu/notes
Live (.ipynb) and static (.md) notebooks
Language:Jupyter Notebook1 0
sk-sahu/rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data
Language:Nextflow1 01
sk-sahu/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow1 0
sk-sahu/rnaseq-nf
A proof of concept of RNAseq pipeline
Language:Nextflow1 0
sk-sahu/runner
Ready to use Running R Instances (Run-R == RunneR)
Language:Jupyter Notebook2 0
sk-sahu/sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
Language:Nextflow1 01
sk-sahu/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
Language:Nextflow1 0
sk-sahu/sk-sahu
1 0
sk-sahu/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
Language:Perl1 0
sk-sahu/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python1 0
sk-sahu/streamlit-example
Example Streamlit app that you can fork to test out share.streamlit.io
Language:Python1 0
sk-sahu/the-turing-way
Host repository for The Turing Way: a how to guide for reproducible data science
Language:TeX1 0