/EcoGEx

Arabidopsis EcoGEx (R-📦 + 🕸️-App)

Primary LanguageRMIT LicenseMIT

EcoGEx : Ecotype-specific Gene Expression (R-📦 + 🕸️-App)

Build Status GitHub release

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Quick Start

EcoGEx Web instance can be accessed - here

Install the package and run the shiny app locally

require(devtools)
devtools::install_github("sk-sahu/EcoGEx")

To run EcoGEx instance locally:

library(EcoGEx)
runEcoGEx()

About

Arabidopsis EcoGEx is a shinny web app to find Expression of a Gene across different accessions/strains of Arabidopsis and their geographical locations information of origin.

By simply using an AGI (Arabidopsis Gene Identifier) you can look at their Expression pattern and also can Compare between diffrent accessions.

Here is an example of some graphical outputs from the results after running the app:

If you have an idea for improvement or found a bug then please raise an issue.
Or simply email on: sangramk@iisermohali.ac.in