sk-sahu

sk-sahu's Stars

• BurntSushi/ripgrep

  ripgrep recursively searches directories for a regex pattern while respecting your gitignore

  Language:Rust47.3k2891.6k1.9k

• BurntSushi/xsv

  A fast CSV command line toolkit written in Rust.

  Language:Rust10.3k100254316

• vividvilla/csvtotable

  Simple command-line utility to convert CSV files to searchable and sortable HTML table.

  Language:Python1.1k3328114

• 2mol/pboy

  a small .pdf management tool with a command-line UI

  Language:Haskell736122924

• samtools/hts-specs

  Specifications of SAM/BAM and related high-throughput sequencing file formats

  Language:TeX638101424174

• chanzuckerberg/cellxgene

  An interactive explorer for single-cell transcriptomics data

  Language:JavaScript613321.4k116

• seankross/postcards

  💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

  Language:HTML533103278

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python515148968

• PoisonAlien/maftools

  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  Language:R43722935217

• mskcc/vcf2maf

  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  Language:Perl36680315215

• sigven/pcgr

  Personal Cancer Genome Reporter (PCGR)

  Language:R2502414747

• knausb/vcfR

  Tools to work with variant call format files

  Language:R2421619154

• cgat-developers/ruffus

  CGAT-ruffus is a lightweight python module for running computational pipelines

  Language:Python173119334

• 38/d4-format

  The D4 Quantitative Data Format

  Language:Rust152106520

• harvardinformatics/bioinformatics-coffee-hour

  Short lessons from FAS Informatics coffee hour

  Language:HTML14122046

• R-CoderDotCom/ggbernie

  A ggplot2 geom for adding Bernie Sanders to ggplot2

  Language:R114217

• gamcil/cblaster

  Find clustered hits from a BLAST search

  Language:HTML9346120

• broadinstitute/genomics-in-the-cloud

  Source code and related materials for the O'Reilly book

  Language:Jupyter Notebook9116026

• gogetdata/ggd-recipes

  conda recipes for genomic data

  Language:Shell85112612

• phenopackets/phenopacket-schema

  Repository for the GA4GH phenopacket schema

  Language:Java751227928

• zoecastillo/microbiomeExplorer

  The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Joseph N. Paulson.

  Language:R6991121

• LUMC/pytest-workflow

  Configure workflow/pipeline tests using yaml files.

  Language:Python637839

• lifebit-ai/cloudos-cli

  Python library and Command Line Interface for interacting with Lifebit Applications

  Language:Python468730

• gogetdata/ggd-cli

  The command-line interface to GGD

  Language:Python425163

• conda-incubator/conda-env-builder

  Build and maintain multiple custom conda environments all in one place.

  Language:Scala36284

• awslabs/linter-rules-for-nextflow

  Linter rules for Nextflow DSL scripts

  Language:Groovy28821

• lifebit-ai/action-cloudos-cli

  :octocat: Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli

  Language:Shell276112

• Clinical-Genomics/fusion-report

  Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/

  Language:Python245439

• lifebit-ai/fail-nf

  A mini (dumb) nextflow pipeline to test pipeline failures in general

  Language:Nextflow2401

• lifebit-ai/spammer-wdl

  Language:WDL1431