Clinical-Genomics/fusion-report

Issues

• Run without cosmic

  #48 opened 3 months ago by tijeco
  1

• Fusion_report download issue

  #72 opened 3 months ago by APL-MolecularPathology
  2

• Fusion report fusiongdb.db missing

  #75 opened 6 months ago by lieselfitz
  3

• Fix scoring

  #70 opened a year ago by rannick
  0

• Remove sync

  #69 opened a year ago by rannick
  0

• what is fusion_report sync?

  #57 opened a year ago by anoronh4
  2

• Mitelman DB no longer available?

  #52 opened a year ago by marchoeppner
  7

• Fusionreport download Issue in the rnafusion nextflow pipeline

  #62 opened a year ago by shwcha9
  0

• Gene name issue?

  #60 opened 2 years ago by marchoeppner
  0

• how to indicate different genomes

  #56 opened 2 years ago by anoronh4
  1

• Download of required starts but doesn't complete

  #50 opened 3 years ago by wudustan
  7

• Scoring function

  #2 opened 3 years ago by matq007
  1

• Tiny code issue with latest update

  #46 opened 3 years ago by Rmulet
  0

• HTTP Error 404 with `fusion_report download`

  #44 opened 3 years ago by yuifu
  2

• Mitelman database migrated

  #42 opened 3 years ago by prepiscak
  1

• Can fusion-report work for hg19?

  #43 opened 3 years ago by xiucz
  1

• how can I do sqlite3 fusiongdb.db < fusion_report/db/FusionGDB.sql

  #40 opened 4 years ago by zsanli
  1

• Access dictionary using get with default

  #39 opened 4 years ago by matq007
  0

• where is the database

  #37 opened 4 years ago by chaoyanggu
  5

• Two ETV6-ABL1 fusion with different breakpoints.

  #38 opened 4 years ago by widfa11
  1

• Issue when saving fusion

  #34 opened 4 years ago by matq007
  0

• sqlite3.ProgrammingError

  #30 opened 5 years ago by jingwangiub
  6

• Exon Skipping Annotation

  #29 opened 5 years ago by tefirman
  1

• Peer timeout

  #28 opened 5 years ago by matq007
  0

• --export csv does not work

  #26 opened 5 years ago by valleema
  2

• --tool_cutoff arguments leads to error

  #25 opened 5 years ago by valleema
  1

• Arriba in fusion-report vs. nf-core/rnafusion

  #24 opened 5 years ago by suhrig
  2

• Cannot download more than 78% / 100MB of TCGA_ChiTaRS_combined_fusion_ORF_analyzed_gencode_h19v19.txt

  #23 opened 5 years ago by valleema
  1

• Implement Arriba 1.0.1

  #4 opened 5 years ago by matq007
  0

• Export fusions in multiple formats

  #16 opened 5 years ago by matq007
  0

• Slack invite link

  #20 opened 5 years ago by ewels
  0

• COSMIC fusion not detected

  #19 opened 5 years ago by ChiBia
  5

• Throw an error on empty database path

  #18 opened 6 years ago by matq007
  1

• fusion selection

  #14 opened 6 years ago by gybeata
  1

• Missing empty file verification

  #13 opened 6 years ago by matq007
  0

• Explain more in depth all the generated files

  #8 opened 6 years ago by matq007
  0

• Explain in depth all parameters

  #11 opened 6 years ago by matq007
  0

• Generate fusion page despite no info from database

  #12 opened 6 years ago by matq007
  0

• Rename fusion_genes_mqc.json to fusions_mqc.json

  #9 opened 6 years ago by matq007
  0

• Add version parameter

  #10 opened 6 years ago by matq007
  0

• Things to finish for 1.0

  #1 opened 6 years ago by matq007
  3

• Make a logo

  #3 opened 6 years ago by ewels
  1

• Enable zooming in PPI graph

  #5 opened 6 years ago by matq007
  1