Pinned Repositories
BioDiscML
Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
cerebroViz
chronos
Modeling of time series data for CRISPR KO experiments
clustree
Visualise Clusterings at Different Resolutions
CNsummaryplots
Script to compute copy number summary plots from Illumina 450k/EPIC methaltion arrays
CRISPRAnalyzeR
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
epigeneticclock
Calculate DNA methylation age using Horvath 2013 method
fastq-info
Calculate fastq reads and sequencing coverage
gmqn
Gaussian Mixture Quantile Normalization (GMQN)
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
wudustan's Repositories
wudustan/BioDiscML
Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
wudustan/cerebroViz
wudustan/chronos
Modeling of time series data for CRISPR KO experiments
wudustan/clustree
Visualise Clusterings at Different Resolutions
wudustan/CNsummaryplots
Script to compute copy number summary plots from Illumina 450k/EPIC methaltion arrays
wudustan/CRISPRAnalyzeR
CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens
wudustan/gmqn
Gaussian Mixture Quantile Normalization (GMQN)
wudustan/hic
Analysis of Chromosome Conformation Capture data (Hi-C)
wudustan/ITD-Assembler
ITD detection package from https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1031-8
wudustan/nf-cmgg-structural
Nextflow workflow for calling structural variants
wudustan/northernbug.github.io
The NorthernBUG Website
wudustan/OmnipathR
R client for the OmniPath web service
wudustan/privateGPT
Interact privately with your documents using the power of GPT, 100% privately, no data leaks
wudustan/sarek
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
wudustan/scDblFinder
Methods for detecting doublets in single-cell sequencing data
wudustan/scRNA-seq_notes
A list of scRNA-seq analysis tools
wudustan/scRNA-seq_online
wudustan/scrublet
Detect doublets in single-cell RNA-seq data
wudustan/shiny_GlioVis
Data visualization tools for brain tumour datasets
wudustan/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
wudustan/slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
wudustan/SoupX
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
wudustan/tardis
Toolkit for automated and rapid discovery of structural variants
wudustan/wudustan.github.io
wudustan/CICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.
wudustan/IlluminaHumanMethylationEPICv2anno.ilm20a1.hg38
Annotation object for Illumina EPIC v2 methylation array. Build for internal Glioma Team use and not guaranteed to work.
wudustan/INfORM
A new tool for Inference of NetwOrk Response Modules
wudustan/localGPT
Chat with your documents on your local device using GPT models. No data leaves your device and 100% private.
wudustan/RIRA
Code for utility of RIRA for classification of cell types/phenotypes
wudustan/SCP
SCP provides a comprehensive set of tools for single cell data processing and downstream analysis.