cgat-developers/ruffus

Issues

• Ruffus installation error (ModuleNotFoundError: No module named 'task')

  #128 opened a year ago by Aditya-Gautam20
  2

• Test suite consumes an extraordinary amount of memory

  #104 opened 6 years ago by tillea
  4

• Patch to build with sphinx 4.2

  #127 opened 3 years ago by tillea
  0

• Memory hungry

  #122 opened 4 years ago by santids
  1

• PyPI sdist contains a file not found anywhere in the repo

  #123 opened 4 years ago by bnavigator
  0

• OMP: Info #270: omp_set_nested routine deprecated, please use omp_set_max_active_levels instead.

  #121 opened 4 years ago by schultzm
  0

• Relative paths in history

  #119 opened 5 years ago by alexmemory
  0

• Discovery of valid parameters for OO-syntax

  #117 opened 5 years ago by FrithiofJensen
  0

• Supplying extras as a dict

  #55 opened 9 years ago by jrderuiter
  3

• drmaa errors- resubmit/retry

  #116 opened 5 years ago by cchng
  0

• Missing tags for 2.8.2 and 2.8.3

  #115 opened 5 years ago by scarabeusiv
  0

• Output CWL/WDL for a workflow

  #112 opened 6 years ago by AndreasHegerGenomics
  0

• [architecture] Specify pipeline in task_decorator

  #111 opened 6 years ago by shouldsee
  10

• www.ruffus.org.uk shows registrar page for some links

  #94 opened 6 years ago
  13

• Slurm requirements

  #106 opened 6 years ago by radaniba
  1

• Time stamps not updating on rerun tasks

  #105 opened 6 years ago by IanSudbery
  1

• ruffus 2.8.0 does not work with gevent >= 1.2

  #101 opened 6 years ago by AndreasHeger
  0

• OO syntax with split using keyword arguments is broken

  #91 opened 6 years ago by jbarlow83
  1

• use asyncio to manager workers

  #100 opened 6 years ago by AndreasHeger
  2

• Make ruffus compatible with gevent Pool

  #84 opened 6 years ago by AndreasHeger
  1

• gevent as process_manager and jobs_limit are incompatible

  #99 opened 6 years ago by AndreasHeger
  0

• reformat code to pep8

  #87 opened 6 years ago by AndreasHeger
  0

• Investigate if tests could be run in pytest

  #86 opened 6 years ago by AndreasHeger
  6

• can one iterate over files in a zip file?

  #82 opened 7 years ago by chananshgong
  1

• Install fails on Python 3.7

  #90 opened 6 years ago by jbarlow83
  1

• Add testing for py35 and py36

  #88 opened 7 years ago by AndreasHeger
  0

• use travis build matrix for tests

  #89 opened 7 years ago by AndreasHeger
  0

• Unable to reuse pipeline names

  #78 opened 8 years ago by rulai-huajunzeng
  1

• OperationalError: database is locked

  #63 opened 7 years ago by AHCChan
  2

• Unable to use files with special character in their names

  #83 opened 7 years ago by codemeleon
  0

• Do not run tasks with jobs_limit==1 in the multiprocessing.Pool when multiprocessing is enabled

  #81 opened 7 years ago by Jerry-Ma
  0

• Obsolete references to Google Code

  #80 opened 8 years ago by jwilk
  0

• From one task with multiple output to many tasks with single output

  #77 opened 8 years ago by felixeye
  0

• run task function with different parameter

  #76 opened 8 years ago by Jerry-Ma
  0

• ruffus cmdline and OO syntax

  #73 opened 8 years ago by mbiokyle29
  1

• how to change default working dir?

  #72 opened 9 years ago by swuecho
  0

• Exception handling in task.py

  #71 opened 9 years ago by kemaleren
  0

• Duplicate task name error when using Spyder IDE

  #70 opened 9 years ago by msdayton
  1

• ruffus sometimes throws exceptions in RethrownJobError

  #65 opened 9 years ago by jbarlow83
  8

• How to collate a mixed list of file

  #68 opened 9 years ago by mbiokyle29
  1

• Argument parsing error messages are unhelpful

  #66 opened 9 years ago by bunbun
  1

• Possible enhancement: @zipper

  #62 opened 9 years ago by mfalda
  6

• Circumvent custom required args when ruffus.cmdline args are set

  #56 opened 9 years ago by mbiokyle29
  3

• Improve warning about unmatched file names

  #60 opened 9 years ago
  0

• bug: drmaa_wrapper should use logger.warning instead of logger.warn

  #61 opened 9 years ago by bjpop
  2

• Formatter sometimes resolves to different (wrong) output

  #58 opened 9 years ago by jrderuiter
  4

• Support callable objects instead of functions as tasks

  #57 opened 9 years ago by jrderuiter
  0

• active_if appears not to be respected

  #54 opened 9 years ago by srsridharan
  1

• Zero intermediate files as soon as they are no longer necessary (posttask?)

  #52 opened 10 years ago by jrderuiter
  1

• Bug: @check_if_uptodate is ignored with @parallel

  #53 opened 10 years ago by bunbun
  2