Pinned Repositories
alv
A console-based alignment viewer
anvil-course
Course demo code and other hand-out materials for our Anvil: Web apps with nothing but Python course
ARBanker
Download metadata from the CDC and FDA AR Isolate Bank
ariba
Antimicrobial Resistance Identification By Assembly
Budgitree
entrez_direct_tut
Tutorial on using E-utilities
havic
Detect Hepatitis A Virus Infection Clusters
pandoo
pbzip2_perl_bash_file_alpine
Minimal alpine image with bash and lbzip2
SliceAudio
Slice up audio files in batch to generate one shot samples
schultzm's Repositories
schultzm/entrez_direct_tut
Tutorial on using E-utilities
schultzm/SliceAudio
Slice up audio files in batch to generate one shot samples
schultzm/Budgitree
schultzm/alv
A console-based alignment viewer
schultzm/havic
Detect Hepatitis A Virus Infection Clusters
schultzm/pandoo
schultzm/pbzip2_perl_bash_file_alpine
Minimal alpine image with bash and lbzip2
schultzm/anvil-course
Course demo code and other hand-out materials for our Anvil: Web apps with nothing but Python course
schultzm/ARBanker
Download metadata from the CDC and FDA AR Isolate Bank
schultzm/ariba
Antimicrobial Resistance Identification By Assembly
schultzm/biopython
Official git repository for Biopython (converted from CVS)
schultzm/CRIS
Find CRISPR binding sites
schultzm/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
schultzm/fastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
schultzm/geometree
Compute distances between phylogenetic trees
schultzm/GFFtoFASTA
Convert GFF format files to multi-FASTA
schultzm/groovy
Apache Groovy: A powerful multi-faceted programming language for the JVM platform
schultzm/IS_mapper
IS mapping software
schultzm/ngmaster
In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)
schultzm/p2xkit
Primer-to-x kit, where x is 'isPCR', 'qPCR'
schultzm/RM-seq
RM-seq is a bioinformatics tool for assessing resistance mutations from complex or pooled resistant bacterial population using barcoded amplicons sequencing data
schultzm/schultzm.github.io
schultzm/snp-dists
Pairwise SNP distance matrix from a FASTA sequence alignment
schultzm/SpartanGPUCourse
Using GPGPUs on Spartan