schultzm/havic

Issues

• Should include a change log

  #16 opened 4 years ago by andersgs
  1

• ruffus not a dep in setup.py ?

  #21 opened 4 years ago by tseemann
  0

• install.sh instructions

  #20 opened 4 years ago by tseemann
  0

• Needs to be installable via conda directly

  #19 opened 5 years ago by andersgs
  0

• Should include some guidelines for contributors

  #18 opened 5 years ago by andersgs
  0

• Should include a Code of Conduct

  #17 opened 5 years ago by andersgs
  0

• Update documentation and install instructions

  #13 opened 5 years ago by schultzm
  0

• Rename havic to something more generic

  #15 opened 5 years ago by schultzm
  0

• r dep check

  #14 opened 5 years ago by schultzm
  1

• Convert ruffus pipeline to snakemake

  #8 opened 5 years ago by schultzm
  2

• allow setting of reference amplicon

  #5 opened 5 years ago by schultzm
  1

• allow user-selection of distance algorithm

  #4 opened 5 years ago by schultzm
  1

• allow setting of branch support cutoffs for clusterpicker search

  #6 opened 5 years ago by schultzm
  1

• todo list of enhancements

  #9 opened 5 years ago by schultzm
  0

• create unittest testsuite

  #12 opened 5 years ago by schultzm
  1

• trim seqs bug

  #3 opened 5 years ago by schultzm
  1

• remove presets for ncpus

  #7 opened 5 years ago by schultzm
  1

• update README.md

  #10 opened 5 years ago by schultzm
  1

• fix `rpy2` imports for `havic depcheck`

  #11 opened 5 years ago by schultzm
  1

• Ensure that duplicate sequence names are considered during trim

  #1 opened 7 years ago by schultzm
  0

• move Ruffus .sqlite database to /tmp

  #2 opened 7 years ago by schultzm
  1