Pinned Repositories
andersgs.github.io
My page with blogdown
beast2_constsites
Update your BEAST2 XML to account for constant sites
db-check
Sanity check your FASTA DB
dnabarcodereader
Automate DNA barcode assembly, quality control, and query
harrietr
An `R` package for various phylogenetic and evolutionary biology data manipulations
kraken-trawl
A tool to help create custom `kraken` databases
LisSero
In silico serotype prediction for Listeria monocytogenes
meningotype
In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
microsimr
microsimr
andersgs's Repositories
andersgs/harrietr
An `R` package for various phylogenetic and evolutionary biology data manipulations
andersgs/kraken-trawl
A tool to help create custom `kraken` databases
andersgs/beast2_constsites
Update your BEAST2 XML to account for constant sites
andersgs/db-check
Sanity check your FASTA DB
andersgs/andersgs.github.io
My page with blogdown
andersgs/dnabarcodereader
Automate DNA barcode assembly, quality control, and query
andersgs/measuringNaturalSelection
Code used in the chapter Measuring Natural Selection
andersgs/meningotype
In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
andersgs/microsimr
microsimr
andersgs/transtreesampler
Sample transmission trees using Outbreaker2
andersgs/LisSero
In silico serotype prediction for Listeria monocytogenes
andersgs/beastify
Partition your alignment into distinct codon positions and non-coding positions
andersgs/bsibayes
An R package for Bayesian analysis of messy epidemiological data
andersgs/canberra_workshop_day2
andersgs/DNABarcodes
Automated DNA barcode assembly, quality control, and annotation
andersgs/flylips
A tool to fit ellipses to Drosophila wings
andersgs/irelr
An R package that implements the functionality of iRel
andersgs/mask_plasmid
Generate a quick BED file of a Genbank file to feed into Snippy4 --mask
andersgs/mig-converter
Convert Migrate-N output from M to Nm
andersgs/migverify
Check your sequence Migrate-N infiles for monomorphic loci and too many missing data
andersgs/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
andersgs/mycv
My CV
andersgs/nullarbor_translate
Translate the Nullarbor output into any format using Jinja2 templates
andersgs/pop_gen_scripts
A repo for some of my collection of population genetic scripts
andersgs/py_fasta_validator
A Python extension of the fasta validator
andersgs/slim-containers
Slimmer container for bioinformatics using conda
andersgs/thedaggiebinfie
My website
andersgs/vs-locus
A tool to mine vsearch cluster results for haplotypes
andersgs/workflows
Community maintained workflows & tools (with examples)