Pinned Repositories
bunbun.github.io
Build a Jekyll blog in minutes, without touching the command line.
cache-ensembl
Automatically exported from code.google.com/p/cache-ensembl
gtf-to-genes
Automatically exported from code.google.com/p/gtf-to-genes
HMMoC-BFloat-Algebra
A tiny C++ library supplying the Algebra<> template, for polymorphic representation of non-negative floating-point values in either native (eg double), log-transformed, or BFloat representations. BFloat is the Buoyant Float type, allowing fixed-precision representation at an arbitrary precision range. The library is based on code from: Lunter G. HMMoC—a compiler for hidden Markov models. Bioinformatics (2007) 23(18): 2485-2487. The code was derived by Ian Holmes and Gerton Lunter from Holmes I, Rubin GM. An expectation maximization algorithm for training hidden substitution models. J Mol Biol. 2002 Apr 12;317(5):753-64. You may use at will, subject to the license, but *please cite those two papers* in your academic publications associated with uses of this library. Thank you!
HTS-waterworks
A Ruffus pipeline for Analysis of High-Throughput Sequencing data
interval_dict
Associative array interval library for c++17/20.
nested-dict
nested_dict provides python dictionaries with multiple levels of nested-ness
nextclip
Nextera Long Mate Pair analysis and processing tool
pyre2
Python wrapper for RE2
python-docx
Create and modify Word documents with Python
bunbun's Repositories
bunbun/nested-dict
nested_dict provides python dictionaries with multiple levels of nested-ness
bunbun/gtf-to-genes
Automatically exported from code.google.com/p/gtf-to-genes
bunbun/bunbun.github.io
Build a Jekyll blog in minutes, without touching the command line.
bunbun/cache-ensembl
Automatically exported from code.google.com/p/cache-ensembl
bunbun/HMMoC-BFloat-Algebra
A tiny C++ library supplying the Algebra<> template, for polymorphic representation of non-negative floating-point values in either native (eg double), log-transformed, or BFloat representations. BFloat is the Buoyant Float type, allowing fixed-precision representation at an arbitrary precision range. The library is based on code from: Lunter G. HMMoC—a compiler for hidden Markov models. Bioinformatics (2007) 23(18): 2485-2487. The code was derived by Ian Holmes and Gerton Lunter from Holmes I, Rubin GM. An expectation maximization algorithm for training hidden substitution models. J Mol Biol. 2002 Apr 12;317(5):753-64. You may use at will, subject to the license, but *please cite those two papers* in your academic publications associated with uses of this library. Thank you!
bunbun/HTS-waterworks
A Ruffus pipeline for Analysis of High-Throughput Sequencing data
bunbun/interval_dict
Associative array interval library for c++17/20.
bunbun/nextclip
Nextera Long Mate Pair analysis and processing tool
bunbun/pyre2
Python wrapper for RE2
bunbun/python-docx
Create and modify Word documents with Python
bunbun/random-access-zip-file
Automatically exported from code.google.com/p/random-access-zip-file
bunbun/sphinx_rtd_theme
Sphinx theme for readthedocs.org