Pinned Repositories
berp
An implementation of Python 3
blip
A bytecode compiler for Python 3
favr
Filtering and Annotation of Variants that are Rare
haskell-linux-perf
Haskell library for reading perf.data files from the linux performance events tool.
haskell-mpi
MPI bindings for Haskell
js-turtle
Turtle graphics in Javascript using HTML5 canvas
language-python
A parser for Python 2.x and 3.x written in Haskell
methpat
A program for summarising CpG methylation patterns
ministg
Ministg is an interpreter for a high-level, small-step, operational semantics for the STG machine.
rubra
Infrastructure code to support DNA pipeline
bjpop's Repositories
bjpop/blip
A bytecode compiler for Python 3
bjpop/language-python
A parser for Python 2.x and 3.x written in Haskell
bjpop/js-turtle
Turtle graphics in Javascript using HTML5 canvas
bjpop/haskell-mpi
MPI bindings for Haskell
bjpop/varlap
A tool aimed at quality control of DNA variants arising from sequencing alignments. It reports a suite of statistics about variants relating to their local alignment context in BAM files.
bjpop/gurita
A convenient and expressive tool for data analytics and plotting on the command line
bjpop/classify_sequencer
Try to detect DNA sequencing platform from read IDs
bjpop/asteroids
A clone of the asteroids game using the Pygame library
bjpop/binary_search_tree
Simple unbalanced binary search tree in Python
bjpop/coglabweb
Website for the Colorectal Oncogenomics Group
bjpop/pseudofinder
Find processed pseudogenes in DNA sequencing data using input structural variants
bjpop/snvly
Snvly is a tool aimed at quality control of DNA variants arising from sequencing alignments. It reports a suite of statistics about variants relating to their local alignment context in BAM files.
bjpop/website
My website
bjpop/bamreadid
Get the read ID of the first read in a BAM file
bjpop/bamreadlen
Calculate sequencing read length from a BAM file
bjpop/base_counter_invar
Base counter for INVAR sequencing
bjpop/biodemo
bjpop/BUSA90537_2023_project
Files for the BUSA90537 Coding for Business Problems project in 2023
bjpop/comut
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
bjpop/cpython
The Python programming language
bjpop/INVAR2
restructures version of invar
bjpop/janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
bjpop/obs-gyn-website
bjpop/operator_precedence_parser
bjpop/preceptweb
Website for the PRECEPT project
bjpop/sanger_wgs
bjpop/skynet
bjpop/stackage
"Stable Hackage": vetted consistent packages from Hackage
bjpop/storage_report
bjpop/umitrans