chanzuckerberg/cellxgene

Issues

• Colorscale[QUESTION]

  #2682 opened 6 months ago by SteveTur
  1

• [BUG] Links to demo datasets for Annotate are dud

  #2708 opened 2 months ago by sidneymbell
  0

• [QUESTION] Gene Expression Source Data

  #2707 opened 3 months ago by arkim822
  0

• [BUG] Problems with latest AnnData version

  #2706 opened 3 months ago by const-ae
  0

• [BUG] Cellxgene failing to launch h5ad files

  #2625 opened a year ago by chryssiebrown
  12

• [BUG]

  #2703 opened 3 months ago by keithgmitchell
  0

• Cannot annotate using a cellxgene dataset

  #2688 opened 4 months ago by HafsaKM
  1

• Can't launch the file in Docker [BUG]

  #2684 opened 5 months ago by xhli2
  0

• bump requirement for pandas version past 2.0 [FEATURE REQUEST]

  #2681 opened 6 months ago by matanninio
  0

• [BUG] CELLxGENE not installable - tried conda+pip and docker

  #2677 opened 6 months ago by smoe
  3

• Fix opacity of centroid labels

  #2679 opened 6 months ago by moritzschaefer
  0

• cell ontology visualize

  #2673 opened 7 months ago by onmyojiyys
  1

• [QUESTION] Upload multiple datasets (.h5ad)

  #2614 opened 8 months ago by vschnei
  2

• cellxgene annotate 'file open' error (Win10)

  #2668 opened 9 months ago by kloot
  0

• [QUESTION] What is the expected format for the --gene-sets-file command?

  #2666 opened 10 months ago by timothevanmeter
  0

• why some of the atlases on cellxgene do not have PCA in them. How can we use them to annotate our sample.

  #2664 opened 10 months ago by Sirin24
  0

• [QUESTION] How can non-overlapping embeddings be handled smoothly?

  #2659 opened a year ago by nictru
  0

• [FEATURE REQUEST] .CXG (TileDb compliant) format support from single-cell-explorer to cellxgene Annotate

  #2655 opened a year ago by Neah-Ko
  5

• [BUG] cells not able to be subset by specific annotations

  #2657 opened a year ago by Pointillomic
  2

• Annotate - update BE dependencies

  #2618 opened a year ago by dsadgat
  3

• how to annotate the celltype

  #2647 opened a year ago by zhendejuzi
  2

• 使用示例anndata文件启动 Annotate 开始报错如何解决呢

  #2642 opened a year ago by woaichitudou123
  3

• Optimizing Large Dataset Loading and Differential Expression Analysis in local hosted CellxGene VM

  #2630 opened a year ago by chunhuicai
  3

• [QUESTION] Increase the size of dots/cells

  #2639 opened a year ago by yalayoubi
  0

• Annotate - update FE dependencies

  #2617 opened a year ago by dsadgat
  0

• Issue with opening files [BUG]

  #2633 opened a year ago by ccnawrocki
  3

• install document update needed

  #2635 opened a year ago by yubin-ai
  0

• [FEATURE REQUEST] Plot zeros in grey, nonzero using colormap

  #2629 opened a year ago by slinnarsson
  1

• [FEATURE REQUEST] Option to choose the dot plot order [low to high expression as in Scanpy]

  #2624 opened a year ago by gokceneraslan
  1

• Load data to cellxgene with SOMA 💡?

  #2623 opened a year ago by rgranit
  0

• Feature request: distinguish zeros when plotting

  #2616 opened 2 years ago by slinnarsson
  0

• [BUG] Can not start cellxgene

  #2615 opened 2 years ago by pati-ni
  5

• Track outreach/partnership opportunities for predictive annotation in the single cell academic community (computational tool builders)

  #2596 opened 2 years ago by MaximilianLombardo
  0

• Announce cellxgene predictive annotation in cellxgene users

  #2593 opened 2 years ago by MaximilianLombardo
  0

• Advertise vignettes demonstrating use cases to grantee community - Single Cell Newsletter

  #2592 opened 2 years ago by MaximilianLombardo
  0

• Publish vignettes in docs site that demonstrate use cases of predictive annotation

  #2591 opened 2 years ago by MaximilianLombardo
  0

• 05: Predictive Annotation

  #2595 opened 2 years ago by MaximilianLombardo
  0

• 404 Error when running differential test on cellxGene

  #2613 opened 2 years ago by bijuissacch224610
  5

• [QUESTION] Ensembl gene name

  #2606 opened 2 years ago by Edhelia
  2

• [BUG]

  #2612 opened 2 years ago by EMRutherford
  3

• [BUG] AttributeError: module 'flask.json' has no attribute 'JSONEncoder'

  #2608 opened 2 years ago by xaviergeorge
  1

• [QUESTION] name of gene Ensembl ..

  #2605 opened 2 years ago by Edhelia
  1

• [REQUEST] Add citation and link to the CELLxGENE preprint to the README

  #2604 opened 2 years ago by 0seastar0
  0

• LR models are evaluated against deep learning approach

  #2590 opened 2 years ago by MaximilianLombardo
  0

• Deep Learning models trained on all the tissue types (one master model) (pan-tissue model)

  #2594 opened 2 years ago by MaximilianLombardo
  1

• LR Models trained on all the tissue types (one master model) (pan-tissue model)

  #2589 opened 2 years ago by MaximilianLombardo
  1

• Tissue specific models are evaluated and trained

  #2588 opened 2 years ago by MaximilianLombardo
  1

• [FEATURE REQUEST] resize left and right panes.

  #2602 opened 2 years ago by crichgriffin
  0

• differential expression with low number of genes

  #2597 opened 2 years ago by hschult
  3

• [BUG] GET http://localhost:5005/api/v0.2/colors: 404 (NOT FOUND)

  #2598 opened 2 years ago by alexlenail
  10