Pinned Repositories
bandcamp-downloader
Downloads tracklist from bandcamp site and assigns metadata to the tracks
concoord
Coordination Service for Distributed Systems
contrib
The OpenMS contrib libraries
coop
Fast covariance, correlation, and cosine similarity.
CRISPR-timeseq
Drop out screen analysis of time sequence data
cutadapt
cutadapt removes adapter sequences from sequencing reads
dvorak-qwerty
Linux configuration files for Dvorak Keyboard Layouts with Qwerty layout modifier keys
pati-ni's Repositories
pati-ni/dvorak-qwerty
Linux configuration files for Dvorak Keyboard Layouts with Qwerty layout modifier keys
pati-ni/cutadapt
cutadapt removes adapter sequences from sequencing reads
pati-ni/bandcamp-downloader
Downloads tracklist from bandcamp site and assigns metadata to the tracks
pati-ni/concoord
Coordination Service for Distributed Systems
pati-ni/contrib
The OpenMS contrib libraries
pati-ni/coop
Fast covariance, correlation, and cosine similarity.
pati-ni/CRISPR-timeseq
Drop out screen analysis of time sequence data
pati-ni/eliteclinic-scrapper
pati-ni/emacs-config
GNU Emacs configuration files
pati-ni/fftw3
This is the official repository for the FFTW Fourier transform library, version 3.x
pati-ni/geospatial-data
This is a repository that utilizes the C++ STL to build efficient algoritmhs that handle geospatial data
pati-ni/harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
pati-ni/kazoo
Kazoo is a high-level Python library that makes it easier to use Apache Zookeeper.
pati-ni/kissfft
mostly a mirror of the original kissfft source by Mark Borgerding.
pati-ni/monocle3
pati-ni/OpenMS
The codebase of the OpenMS project
pati-ni/openreplica-stress
Stress framework for Openreplica
pati-ni/pati-ni.github.io
GSoC '17 blog
pati-ni/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
pati-ni/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
pati-ni/scfind
pati-ni/scfind-shiny
pati-ni/scRNA-seq_silk_organoids
This repo holds the code for the paper "Single cell transcriptomics captures features of developing and mature DA neurons in human brain organoids and reveals more precise and reproducible patterning in silk-bioengineered culture"
pati-ni/scRNA.seq.datasets
Collection of public scRNA-Seq datasets used by our group
pati-ni/scRNASeqPipeline
pati-ni/SPRING_dev
pati-ni/statannot
add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot
pati-ni/zookeeper-benchmark
Our benchmarking tool for ZooKeeper
pati-ni/zookeeper-stress
Testing framework for stressing Apache zookeeper write performance