sidneymbell
Computational biologist. Excited about open science, data viz, and equity in science! PhD in virus evolution and immunity.
Chan Zuckerberg InitiativeSan Francisco, CA
Pinned Repositories
dengue-antigenic-dynamics
Dengue antigenic variation and evolutionary dynamics
siv-cst
Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission
cellxgene
An interactive explorer for single-cell transcriptomics data
czid-web
Infectious Disease Sequencing Platform
galago
Interpretation aids for genomic epidemiology
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
dissertation
PhD dissertation: "Viral phylodynamics of host adaptation and antigenic evolution"
oss-archetypes
Because "OSS" doesn't stand for "One Size." Providing models and guidelines for the many ways of doing OSS in science.
shasta
De novo assembly from Oxford Nanopore reads.
sidneymbell's Repositories
sidneymbell/dissertation
PhD dissertation: "Viral phylodynamics of host adaptation and antigenic evolution"
sidneymbell/oss-archetypes
Because "OSS" doesn't stand for "One Size." Providing models and guidelines for the many ways of doing OSS in science.
sidneymbell/shasta
De novo assembly from Oxford Nanopore reads.
sidneymbell/augur
Pipeline components for real-time phylodynamic analysis
sidneymbell/backtobasics
sidneymbell/beyond-the-tree
sidneymbell/generic-virus-template
Data and scripts for Zika virus tutorial
sidneymbell/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
sidneymbell/nextclade_data
Datasets for https://github.com/nextstrain/nextclade
sidneymbell/phipseq
sidneymbell/sarscov2-tutorial
Template & tutorial for SARS-CoV-2 analysis
sidneymbell/sci-components
2021 Science Design System Component Library
sidneymbell/setup
Reproducible system setup
sidneymbell/sidneymbell.science
sidneymbell/utils