Sirin24

Pinned Repositories

• pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python45918547184

• BPCells

  Scaling Single Cell Analysis to Millions of Cells

  Language:C++171511018

• cellxgene

  An interactive explorer for single-cell transcriptomics data

  Language:JavaScript648341.4k122

• SoupX

  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data

  Language:R262614837

• nbconvert

  Jupyter Notebook Conversion

  Language:Python1.8k501.2k568

• seurat

  R toolkit for single cell genomics

  Language:R2.3k768.1k922

• scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python2k491.8k608

• scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k261k366

• celltypist

  A tool for semi-automatic cell type classification

  Language:Python318812746

• velocyto.py

  RNA velocity estimation in Python

  Language:Python1621337584

Sirin24's Repositories