const-ae

ggsignif

Easily add significance brackets to your ggplots

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

lemur

Latent Embedding Multivariate Regression

proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

transformGamPoi-Paper

const-ae/ggsignif

Easily add significance brackets to your ggplots

const-ae/ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

const-ae/glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

const-ae/lemur

Latent Embedding Multivariate Regression

const-ae/sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

const-ae/transformGamPoi-Paper

const-ae/transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

const-ae/proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

const-ae/linear_perturbation_prediction-Paper

const-ae/mixdir

Cluster high dimensional categorical datasets

const-ae/pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

const-ae/einsum

Einstein Summation for Arrays in R

const-ae/ggbezier

Bezier curves for 'ggplot2'

const-ae/gggroupedscale

Grouped Discrete Scale for 'ggplot2'

const-ae/Multi-omics-Data-Integration-course

Temporary Repository for the EMBO 2024 Multi-Omics course

const-ae/MyWorkflowManager

This is a simple self-written R workflow manager for slurm systems that I use to automate the submission of jobs

const-ae/transformGamPoi-ShinyApp

Source code for the Shiny App of Comparison of Transformations for Single-Cell RNA-Seq Data

const-ae/cae-quarto-helpers

const-ae/CSAMA

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

const-ae/diffgeo

Working with manifolds in R

const-ae/ecosystem-packages

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

const-ae/EMBO-multi-omics-course

const-ae/fullRankMatrix

This package will help users to create a full rank matrix out of their model matrix. It discovers linear dependent columns and then renames and removes columns to make the matrix full rank.

const-ae/Huber-group-EMBL.github.io

Huber group public webpage

const-ae/lemur-Paper

Code to reproduce analysis in LEMUR paper

const-ae/lemur.utils

R package with helper functions to process the output of lemur

const-ae/MatrixGenerics

Playground for implementing S4 generics for matrix operations

const-ae/single-cell-best-practices

https://www.sc-best-practices.org

const-ae/single-cell-transformer-papers

const-ae/SpatialData