const-ae

ggsignif

Easily add significance brackets to your ggplots

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

lemur

Latent Embedding Multivariate Regression

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

transformGamPoi-Paper

treelabel

Store and work with labels that exist in hierarchical relationships

const-ae/tidygenomics

Tidy Verbs for Dealing with Genomic Data Frames https://const-ae.github.io/tidygenomics/

const-ae/CoefExplainer

Understand How to Interpret the Coefficients of a Categorical Linear Model

const-ae/motif_plotter

A simple tool to create DNA motif plots based directly on matplotlib to enable construction of complex plots

const-ae/CoronaDensity

const-ae/ggquadrilateral

A quadrilateral geom for ggplot2

const-ae/HighlyReplicatedRNASeq

Collection of Bulk RNA-Seq Experiments With Many Replicates

const-ae/proDD

Differential Detection for Label-free (LFQ) Mass Spec Data

const-ae/ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

const-ae/glmGamPoi-Paper

const-ae/kmeansPoi

R package for K-means clustering of Counts

const-ae/matrixStats

R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)

const-ae/proDA-Paper

const-ae/betasigmoid

My very own BetaSigmoid Distribution

const-ae/BiocCheck

const-ae/DelayedMatrixStats

A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package

const-ae/DEP

DEP package

const-ae/DESeq2

Differential gene expression analysis based on the negative binomial distribution

const-ae/EuroBioC2022

European Bioconductor conference website 2022

const-ae/gallery

Gallery of ggplot2 extensions

const-ae/ggrepel

:round_pushpin: Repel overlapping text labels away from each other.

const-ae/GithubActionsTestPackage

R package to play around with Github Actions

const-ae/jointprof

Joint profiling of native and R code

const-ae/Manifolds.jl

Manifolds.jl aims to provide both a unified interface to define and use manifolds as well as a library of manifolds to use for your projects.

const-ae/Manopt.jl

Optimization on Manifolds in Julia

const-ae/Matrix

Fork of https://r-forge.r-project.org/scm/?group_id=61

const-ae/mzR

This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

const-ae/pkgbuild

Find tools needed to build R packages

const-ae/r-svn

Mirror of R svn server with Github actions CI for testing patches

const-ae/sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

const-ae/SingleCellOpenProblems

Formalizing and benchmarking open problems in single-cell genomics