Bioconductor

Software for the analysis and comprehension of high-throughput genomic data

Pinned Repositories

BBS
The Bioconductor Build System
Language:Shell11 16 23413
BiocManager
CRAN Package For Managing Bioconductor Packages
Language:R76 14 13926
bioconductor.org
Source code for the Bioconductor website
Language:HTML32 8 6843
bioconductor_docker
Docker Containers for Bioconductor
Language:Dockerfile88 17 5432
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Language:R136 14 65116
Contributions
Contribute Packages to Bioconductor
143 26 4k35
CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
Language:HTML94 22 846
GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Language:R90 16 10524
LearnBioconductor
Training material for introductory R / Bioconductor courses
Language:R85 29 035
pkgrevdocs
Training Material for Community Reviewers
Language:TeX13 10 5119

Bioconductor's Repositories

Bioconductor/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Language:R90 16 10524
Bioconductor/bioconductor_docker
Docker Containers for Bioconductor
Language:Dockerfile88 17 5432
Bioconductor/Biostrings
Efficient manipulation of biological strings
Language:R65 15 8917
Bioconductor/bioconductor-training
Bioconductor teaching and education committee
Language:HTML51 19 1127
Bioconductor/SummarizedExperiment
A container (S4 class) for matrix-like assays
Language:R36 9 739
Bioconductor/bioconductor.org
Source code for the Bioconductor website
Language:HTML32 8 6843
Bioconductor/VariantAnnotation
Annotation of Genetic Variants
Language:R30 7 7520
Bioconductor/BBS
The Bioconductor Build System
Language:Shell11 16 23413
Bioconductor/SparseArray
High-performance sparse data representation and manipulation in R
Language:C10 12 203
Bioconductor/BiocCheck
Language:R9 13 16428
Bioconductor/BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Language:R9 12 708
Bioconductor/ShortRead
Language:R8 7 116
Bioconductor/bioc2u
Building containers and holding some code for bioc2u, an attempt at extending r2u to all bioc packages, and provide precompiled binaries for ubuntu systems
Language:Shell4 9 41
Bioconductor/biocEDAM
preliminary investigation of biocViews in relation to EDAM ontology
Language:R36
Bioconductor/txdbmaker
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)
Language:R3 10 71
Bioconductor/SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Language:R2 13 01
Bioconductor/support.bioconductor.org
support site code base. Based on Biostars.
Language:Python2 8 1042
Bioconductor/bioconductor_salt
Salt to configure Linux and Mac (x86_64, arm64) for the BBS
Language:SaltStack1 2 783
Bioconductor/EuroBioC2026
Conference website for EuroBioc2026
Language:R14
Bioconductor/h5mread
A fast HDF5 reader
Language:C1
Bioconductor/pwalign
Perform pairwise sequence alignments
Language:R1 9 92
Bioconductor/UCSC.utils
Low-level utilities to retrieve data from the UCSC Genome Browser
Language:R1 9 0
Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages
Language:R0 7 42
Bioconductor/AnVILBase
Language:R9 0
Bioconductor/AnVILGCP
Functionality for the AnVIL platform using GCP
Language:R9 2
Bioconductor/AnVILVRS
Language:R
Bioconductor/BioC2026
conference website for Bioconductor 2026
Language:CSS1
Bioconductor/r2u
Rocker for use with r2u repository
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Bioconductor/ReleaseLaunch
documentation and R scripts helpful for Bioconductor release
Language:R10 71
Bioconductor/status.bioconductor.org
Status page for Bioconductor based on cstate hugo site
2 02