Bioconductor/BiocManager

Issues

• Problem with BiocManager connection to Internet under Windows: problem solved

  #186 opened 7 months ago by lokapal
  5

• version: Bioconductor version cannot be validated; no internet connection?

  #177 opened a year ago by 15993561663
  5

• BiocManager::install() - Error in readRDS(dest) : error reading from connection

  #194 opened 4 months ago by HelenaLC
  6

• Switching to BioC devel with 'BiocManager::install(version="devel")' installs BiocVersion twice

  #168 opened 4 months ago by hpages
  0

• IDEA: BiocManager::install() to fall back to CRANhaven for recently archived CRAN packages

  #190 opened 6 months ago by HenrikBengtsson
  0

• Version map cannot be validated - not mapping to new bioconductor website

  #183 opened 10 months ago by aehrenberg
  9

• Using on Shiny and deploying on Posit

  #185 opened 8 months ago by natyfp
  1

• Issue while using phyloseq with Bioconductor / SSL connect error

  #175 opened a year ago by sroblet
  3

• ver.1.30.22: lazy-load database '/4.3.X_Rlib/BiocManager/R/BiocManager.rdb' is corrupt

  #176 opened a year ago by akhst7
  10

• Provide more guidance on what it means to 'update packages'

  #174 opened a year ago by mtmorgan
  0

• error in addGroupCoverages(ArchRProj = mp, groupBy = "Sample")

  #181 opened a year ago by yangchao4
  1

• Error in grid.Call(C_convert, x, as.integer(whatfrom), as.integer(whatto), : Viewport has zero dimension(s)

  #180 opened a year ago by 15993561663
  2

• 'getOption("repos")' replaces Bioconductor standard repositories

  #179 opened a year ago by 15993561663
  1

• I can't download BiocManager but has been download

  #178 opened a year ago by 15993561663
  3

• Non zero exit status when installing mia package on M1

  #171 opened a year ago by emnatasha
  2

• Better document purpose of BIOCONDUCTOR_ONLINE_VERSION_DIAGNOSIS

  #165 opened a year ago by mtmorgan
  0

• site_repository not permanent

  #162 opened a year ago by LiNk-NY
  3

• Default to Bioc devel for R-devel

  #133 opened a year ago by lshep
  9

• Provide exported function to determine BioC version for R version

  #164 opened a year ago by hadley
  8

• Local path install prompt not usable

  #158 opened a year ago by rbutleriii
  3

• BiocManager does not respect `dependencies = TRUE` when the non-Suggests packages have already been installed

  #161 opened a year ago by mtmorgan
  0

• BiocManager::install => no example of downloading specific package versions

  #153 opened 2 years ago by nick-youngblut
  5

• Suppress the prompt from the remotes package

  #126 opened 2 years ago by Jiefei-Wang
  1

• passing 'top level' arguments `checkBuilt`, `version`, `site_repository`

  #143 opened 2 years ago by LiNk-NY
  0

• Installation problem in Bioconductor packages in R. BiocManager::intall() not working.

  #148 opened 2 years ago by bakshiasif
  3

• BiocManager::install(version = "devel", ask = FALSE) failing

  #157 opened 2 years ago by bbimber
  3

• I can't run DECIPHER::IdClusters

  #156 opened 2 years ago by julietaalvarez
  1

• Unable to use do_query() function

  #155 opened 2 years ago by digs1998
  1

• BiocManager::install() cannot install the package and displays an error

  #147 opened 2 years ago by Wangchao-98
  7

• BiocManager::valid() does not check for 'missing' dependencies

  #154 opened 2 years ago by mtmorgan
  1

• Error: argument "update" is missing, with no default

  #142 opened 2 years ago by grimbough
  18

• WISH: Clarify "BiocManager.check_repositories" message and silence it in more cases?

  #144 opened 2 years ago by HenrikBengtsson
  1

• legacy version maps not available

  #119 opened 2 years ago by LiNk-NY
  1

• BiocManager::install(version = "3.15", ask = FALSE, force = TRUE) error

  #146 opened 2 years ago by xec-cm
  1

• BiocManager::install ignores type parameter

  #145 opened 2 years ago by jorainer
  7

• Error: loading failed for install BiocManager packages

  #140 opened 2 years ago by zhoujiaqi704
  11

• BiocManager can't find mac ARM64 binaries

  #139 opened 2 years ago by jwokaty
  4

• BiocManager problems installing from local repository

  #122 opened 2 years ago by mtmorgan
  4

• ask and update options does NOT work with BiocManager::install remotes package

  #136 opened 2 years ago by rgaiacs
  2

• argument force is missing with no default when upgrading from 3.13

  #129 opened 2 years ago by LiNk-NY
  1

• BiocManager::repositories() Reports Missing `books` for 3.15/3.16

  #135 opened 2 years ago by jonyoder
  9

• Install BiocManager successfully in R 4.2.1 but can't use on Windows

  #134 opened 2 years ago by gaospecial
  2

• Error: package or namespace load failed for ‘BiocManager’: .onAttach failed in attachNamespace() for 'BiocManager', details: call: if (max(r) == package_version("3.6")) { error: argument is of length zero

  #132 opened 2 years ago by Qiqing-Fu
  6

• test load fails on clean install of BiocManager

  #131 opened 2 years ago by LiNk-NY
  8

• Using R-devel when the version bumps before Bioconductor's version bumps?

  #130 opened 2 years ago by bbimber
  6

• BiocManager::install() not installing package if available version is lower than current

  #128 opened 3 years ago by hpages
  11

• warning messages on windows

  #125 opened 3 years ago by LiNk-NY
  2

• Suggested package BiocVersion cannot be installed during BiocManager installation

  #124 opened 3 years ago by pmoris
  4

• checking for already installed does not respect lib argument

  #121 opened 3 years ago by lshep
  4

• Option to restrict BiocManager::available() to Bioconductor packages

  #120 opened 3 years ago by kevinrue
  6