jorainer
Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.
Institute for Biomedicine, Eurac ResearchBolzano, Italy
Pinned Repositories
chris_plasma_proteome
General data analysis of the ScanningSWATH mass spectrometry-based plasma proteomics data of CHRIS.
atc
This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these.
ensembldb
This is the ensembldb development repository.
MetaboAnnotationTutorials
Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages
metabolomics2018
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
SpectraTutorials
These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconductor package.
xcms-gnps-tools
Utility functions for the use of xcms with GNPS
xcmsTutorials
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
Spectra
Low level infrastructure to handle MS spectra
xcms
This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis
jorainer's Repositories
jorainer/ensembldb
This is the ensembldb development repository.
jorainer/metabolomics2018
Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
jorainer/SpectraTutorials
These workshops and tutorials provide use cases and examples for mass spectrometry data handling and analysis using the Spectra Bioconductor package.
jorainer/atc
This package provides the Anatomical Therapeutical Chemical (ATC) Classification data from WHOCC and implements functions that facilitate working with these.
jorainer/MetaboAnnotationTutorials
Examples and tutorials for the MetaboAnnotation, MetaboCoreUtils and CompoundDb R packages
jorainer/xcmsTutorials
Tutorials and workshops describing LC-MS(/MS) data pre-processing and analysis using the xcms Bioconductor package
jorainer/metabolomics2023
Contribution to the Metabolomics 2023 conference of the Metabolomics Society
jorainer/AHEnsDbs
Supplies AnnotationHub with EnsDb Ensembl-based annotation databases for all species.
jorainer/AHMassBank
MassBank metadata for AnnotationHub
jorainer/EuroBioC2024
Contribution to the EuroBioC2024 conference
jorainer/annotation_ecosystem
Supplementary material for the annotation ecosystem paper.
jorainer/bioconductor.org
Source code for the Bioconductor website
jorainer/BiocWorkingGroups
Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.
jorainer/chadwm
Making dwm as beautiful as possible!
jorainer/CodeOfConduct
jorainer/CSAMA
Lectures and workshops for the CSAMA Bioconductor workshop
jorainer/CSAMA_website
Website for CSAMA
jorainer/install_scripts
Some installation scripts to easily set up Mac OS system to my needs.
jorainer/memacs
Make file to fetch and build emacs add-ons.
jorainer/MetaboAnnotation
High level functionality to support and simplify metabolomics data annotation.
jorainer/MsBackendRawFileReader
Spectra MsBackend for Thermo Fisher Scientific's New RawFileReader
jorainer/MSEntropy
Spectral entropy for mass spectrometry data.
jorainer/MsQuality_manuscript
jorainer/mzR
This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
jorainer/psi-ms-CV
HUPO-PSI mass spectrometry CV
jorainer/pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
jorainer/RaMP-DB
jorainer/RMassBank
Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html
jorainer/Spectra
Low level infrastructure to handle MS spectra
jorainer/XCMS3_FeatureBasedMN