Issues
- 3
- 1
Error in running the tutorial
#764 opened by Tina9 - 1
adjustRtime not conducted with large dataset, but working after register(SerialParam())
#766 opened by c-ze - 0
Is there any way to map the corresponding MS1 and its isotope information to the MS2 data extracted with spectrum?
#763 opened by GAOJianguo66 - 2
Retention time alignment using a combination of LamaParama and subset-based alignment
#747 opened by CLUES-Emory - 6
- 5
- 3
Regarding the steps of operating FillChromPeaksParam
#754 opened by v-v1150n - 2
- 1
ppm paramenter for ChromPeakAreaParam
#756 opened by stanstrup - 3
Setter for filepath in XcmsExperiment
#748 opened by jmorim - 0
- 0
fillChromPeaks: for MS2 chrom peaks: ensure data is integrated from spectra of the correct isolation window
#751 opened by jorainer - 1
Duplicate values created by fillChromPeaks
#750 opened by frankyWk - 2
- 0
- 9
Waters data problems with Obiwarp
#739 opened by parasitetwin - 1
Best way to deconvolute metabolite data
#738 opened by JasonBason - 3
Ways to extract all MS2 peaks?
#737 opened by jzhou19 - 3
Best way to document additional XCMS object processing steps in the ProcessHistory slot?
#735 opened by wkumler - 3
Error for XIC plot of timsTof data
#734 opened by NorStorz - 1
After I perform chromatographic peak detection, how do I confirm the quality of my peaks?
#736 opened by v-v1150n - 3
Suggested starting parameters for GC-MS data
#720 opened by ckeeling - 16
- 5
- 6
xset crashes on MAC OS 14.3 R 4.3.3 , BiocManager 1.30.22 and xcms 4.0.2
#730 opened by AndreasReinecke - 10
- 13
xcmsSet interface gives errors
#700 opened by rickhelmus - 5
R CMD check problems
#729 opened by jorainer - 5
Trouble plotting XChromatograms
#728 opened by JasonBason - 3
precusor charge for each features
#726 opened by 13479776 - 2
fillChromPeaks error
#727 opened by JasonBason - 1
- 1
reconstructChromPeakSpectra
#721 opened by Slycopersicum - 2
Bad practices with peak merging
#724 opened by jmorim - 5
- 5
Seeking advices about data importing
#717 opened by Babyfaceout - 10
Retention time alignment using PeakGroupsParam's peakGroupsMatrix parameter renders error
#715 opened by pablovgd - 10
- 17
why do_groupChromPeaks_density processing peaks with fixed size of the overlapping slices in mz dimension
#711 opened by DrRuiLi - 2
Vignette: avoid "data" as object name
#704 opened by sneumann - 0
negative subsetting removes chromPeaks
#707 opened by philouail - 1
Definition of anchor peaks for subset-based peakGroups alignment not correct
#702 opened by jorainer - 1
How would a larger peak width vs smaller peak width affect m/z of features detected?
#708 opened by Pembs - 2
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘findChromPeaks’ for signature ‘"XMLDocument", "MatchedFilterParam"’
#710 opened by RbWick - 1
Add tests for some ion mobility files
#706 opened by sneumann - 1
- 1
Batch effect correction without QC sample
#701 opened by Kotchani - 1
findChromPeaks finds duplicate peaks
#695 opened by Pascallio - 3