Bioconductor/bioconductor_docker

Issues

• Issue with the stringi package in RELEASE_3_16

  #59 opened 2 years ago by grimbough
  20

• Lighter bioconductor container in the future?

  #97 opened 7 months ago by JihedC
  2

• Unable to start container process: exec: "/init": stat /init: no such file or directory: unknown

  #99 opened 7 months ago by smartinez-yatiribio
  4

• ERROR; return code from pthread_create() is 22 when calling preprocessCore::normalize.quantiles()

  #22 opened a year ago by lgatto
  12

• Strange issue running image fedora 36 vs 37 - rocker/rstudio::devel works, as does home build

  #70 opened 2 years ago by r-cheologist
  9

• Cannot install packages with BiocManager::install during docker build

  #92 opened a year ago by usu-imeg
  3

• Update bioconductor_docker images for consistency w/ upstream Rocker images

  #91 opened a year ago by nathanweeks
  1

• README continues to mention AnVIL::

  #80 opened a year ago by vjcitn
  2

• update README

  #90 opened a year ago by LiNk-NY
  0

• 'binary' package shared objects are not compatible with the docker container

  #82 opened 2 years ago by mtmorgan
  4

• container defaults to installing packages from source, rather than binary

  #81 opened 2 years ago by mtmorgan
  2

• RELEASE_3_17: *.so shared objects from container_packages in /usr/local/lib/R/site-library packages not loading

  #78 opened 2 years ago by lima1
  9

• Make an ARM image available

  #64 opened 2 years ago by Adafede
  10

• Incorrect references to `rockerdev` Rocker organization in release process document

  #72 opened 2 years ago by noamross
  1

• Conflicting definitions of "devel"/"release" between actual Bioconductor and bioconductor_docker

  #37 opened 3 years ago by bschilder
  12

• libpath to put the custom lib folder in the front

  #66 opened 2 years ago by crazyhottommy
  11

• Unable to install additional Bioconductor packages.

  #65 opened 2 years ago by usu-imeg
  2

• Errors with release 3.16

  #61 opened 2 years ago by fortune9
  3

• leidenalg for Bioc pkg scBubbletree

  #54 opened 2 years ago by jwokaty
  0

• Could not connect to the R session on RStudio Server

  #51 opened 2 years ago by rgaiacs
  1

• Failed bioconductor package installations do not cause docker builds to stop

  #38 opened 3 years ago by pmoris
  3

• Update to R4.2.1

  #48 opened 2 years ago by jwokaty
  1

• Add python3.8-venv to the bioconductor_docker container?

  #46 opened 3 years ago by mtmorgan
  0

• Pip install torch

  #45 opened 3 years ago by jwokaty
  3

• R/Rstudio version conflict

  #39 opened 3 years ago by bschilder
  7

• R graphics engine version 14 is not supported by this version of RStudio

  #35 opened 3 years ago by lgatto
  4

• Update `latest` version to be the same as `RELEASE_3_13`

  #29 opened 4 years ago by nuno-agostinho
  5

• volume setup for caching basilisk infrastructure?

  #33 opened 3 years ago by vjcitn
  1

• Missing `checkbashisms` script creates warning from running check

  #34 opened 3 years ago by omsai
  0

• Error in .install_repos, argument "force" is missing, with no default

  #30 opened 4 years ago by jwokaty
  3

• Any call to `ggplot2` in the current `bioconductor_docker:devel` image makes `R`/`Rstuido` **CRASH**

  #27 opened 4 years ago by r-cheologist
  4

• Install parallel BLAS on bioconductor_docker image

  #28 opened 4 years ago by nturaga
  0

• BiocManager attached on start up

  #12 opened 4 years ago by lgatto
  4

• rocker version for bioc-devel

  #14 opened 4 years ago by lwaldron
  2

• bug: new library path auto added to .libPaths() upon mounting a volume

  #24 opened 4 years ago by nturaga
  1

• Why not use R_LIBS_* variables instead of hard-coded container library?

  #10 opened 5 years ago by nsheff
  6

• Add canary testing for package installation in built containers

  #19 opened 4 years ago by seandavi
  0

• Problems with packagemanager.rstudio.com

  #15 opened 4 years ago by lwaldron
  3

• missing harfbuzz freetype2 fribidi

  #18 opened 4 years ago by nsheff
  5

• Question: When will Docker for Bioconductor 3.12 be available?

  #17 opened 4 years ago by mblue9
  0

• Link to localhost in Documentation Gives SSL Error

  #13 opened 4 years ago by const-ae
  2

• What is the recommended way to run R CMD check with these containers?

  #11 opened 5 years ago by nsheff
  7

• Pulling devel images fails: "unauthorized: authentication required"

  #6 opened 5 years ago by ahmohamed
  1

• RStudio debugger broken

  #9 opened 5 years ago by Shians
  1

• R devel version lagging significantly

  #8 opened 5 years ago by lwaldron
  4

• Update documentation to reflect no user bioc

  #7 opened 5 years ago by lwaldron
  1

• New docker images fail running apt-get update?

  #5 opened 5 years ago by bbimber
  2

• Issue running my bioc docker using volumes

  #4 opened 5 years ago by risserlin
  1

• permission issue - mounting files from host

  #3 opened 5 years ago by FelixErnst
  25