omsai
PhD student and HPC sysadmin; my more interesting projects are actually on GitLab 😇
University of ConnecticutStorrs
Pinned Repositories
groHMM
Fork of bioconductor groHMM: GRO-seq Analysis Pipeline
AndorFRAPPA
Micro-Manager DeviceAdapter for Andor FRAPPA (http://www.andor.com/microscopy-systems/active-illumination/frappa).
andorian-hotkeys
keyboard shortcuts for job productivity
git-swc-worksheet
Worksheet for Software Carpentry Git lesson
microscopy-overlay
Packages for Gentoo GNU/Linux for biological image acquisition and storage.
mpiabc
MPI implementation of parameter fitting using approximate Bayesian computing (ABC) with sequential Monte Carlo (SMC) sampling
pyABC
distributed, likelihood-free inference
pyALC
Laser sled driver. Clone of Andor's Laser Combiner SDK freeing the hardware to respond to any Analog source
spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
omsai's Repositories
omsai/git-swc-worksheet
Worksheet for Software Carpentry Git lesson
omsai/git-novice
Software Carpentry introduction to Git for novices.
omsai/git_intro
omsai/cellgen
Generate TIF images for simulating experiment with CellProfiler / CellProfiler-Analyst.
omsai/countries
Toy repository for teaching how to make pull requests in GitHub
omsai/mpiabc
MPI implementation of parameter fitting using approximate Bayesian computing (ABC) with sequential Monte Carlo (SMC) sampling
omsai/pyABC
distributed, likelihood-free inference
omsai/spack
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
omsai/2020-02-13-python-signal-processing
omsai/ansible-documentation
Ansible community documentation
omsai/BiocCheck
omsai/cellprofiler-hpc-scripts
End-to-end Makefiles and scripts for processing image data with CellProfiler
omsai/docs
Online documentation for Stan language and platform
omsai/dREG
Detecting Regulatory Elements using GRO-seq and PRO-seq
omsai/GenomicRanges
Representation and manipulation of genomic intervals
omsai/imagej.github.io
The ImageJ wiki
omsai/IRanges
Foundation of integer range manipulation in Bioconductor
omsai/mpiboostunit
Toy MPI program using Boost MPI and GoogleTest
omsai/mpithread
Toy MPI programs with threading to debug SLURM scheduler misbehavior
omsai/openzfs-docs
OpenZFS Documentation
omsai/org-kanban
Kanban table for org-mode
omsai/podget
Podcast aggregator optimized for running as a scheduled job (i.e. cron) on Linux
omsai/ProTINA
omsai/publicfilesdemo
omsai/rse-stories
What is an RSE? What is your story? By sharing stories, we can better understand what it means to be a research software engineer.
omsai/spatialdata
An open and interoperable data framework for spatial omics data
omsai/stat-5361
Statistical computing notes
omsai/svg2psp
R package providing a set of function to convert SVG files into spatstat psp objects
omsai/swc_git
Guacamole recipe for workshop
omsai/un-report