Pinned Repositories
bioconductor_docker
Docker Containers for Bioconductor
GlycoMSQuant
This is a Java stand-alone tool for the quantitation of glyco sites. It calculates the proportion of different glyco-PTMs in a protein of interest. It supports data from IP2 (quant compare output files) and MaxQuant.
pctsea-parent
PCTSEA (Proteomics Cell Type Enrichment Analysis) is a tool designed to statistically determine which cell types are significatively enriched in an input set of proteins with certain relative expression values. This process is done by using a database of datasets of RNASeq expression values from single cells from which the cell type is known (or predicted).
PINT
PINT is a new comprehensive web-based system to store, visualize, and query experimental proteomics data obtained under different experimental conditions and projects. PINT provides a very powerful query system through the use of different proteomics-specific data query commands running over both the experimental features and external annotations of the detected protein lists (such as UniprotKB).
ProteinClusterQuant
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
proteoform_dbIndex
extension of dbIndex module to index proteoforms
QuantParser
Parser for quantitative data from files created by Census software.
utilities
General Java util classes used across different projects
bioconductor_docker
Docker Containers for Bioconductor - NEW!
MSstatsSampleSize
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment
smartinez-yatiribio's Repositories
smartinez-yatiribio/bioconductor_docker
Docker Containers for Bioconductor - NEW!
smartinez-yatiribio/MSstatsSampleSize
Simulation tool for optimal design of high-dimensional MS-based proteomics experiment