Bioconductor

Software for the analysis and comprehension of high-throughput genomic data

Pinned Repositories

BBS
The Bioconductor Build System
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BiocManager
CRAN Package For Managing Bioconductor Packages
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bioconductor.org
Source code for the Bioconductor website
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bioconductor_docker
Docker Containers for Bioconductor
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BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
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Contributions
Contribute Packages to Bioconductor
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CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
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GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
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LearnBioconductor
Training material for introductory R / Bioconductor courses
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pkgrevdocs
Training Material for Community Reviewers
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Bioconductor's Repositories

Bioconductor/VariantAnnotation
Annotation of Genetic Variants
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Bioconductor/AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
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Bioconductor/TENxBrainData
An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set.
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Bioconductor/LoomExperiment
A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/
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Bioconductor/ensemblVEP
[DEPRECATED] R Interface to Ensembl Variant Effect Predictor
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Bioconductor/genefilter
genefilter: methods for filtering genes from high-throughput experiments
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Bioconductor/graph
graph: A package to handle graph data structures
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Bioconductor/GSEABase
Gene set enrichment data structures and methods
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Bioconductor/biocViews
Categorized views of R package repositories
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Bioconductor/GOstats
Tools for manipulating GO and microarrays.
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Bioconductor/geneplotter
Graphics related functions for Bioconductor
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Bioconductor/Category
Category Analysis
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Bioconductor/DelayedDataFrame
Delayed operation on DataFrame
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Bioconductor/GenomicFiles
Distributed computing by file or by range
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Bioconductor/RBGL
An interface to the BOOST graph library
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Bioconductor/SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
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Bioconductor/XVector
Foundation of external vector representation and manipulation in Bioconductor
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Bioconductor/annotate
Annotation for microarrays
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Bioconductor/gpls
Classification using generalized partial least squares
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Bioconductor/hypergraph
A package providing hypergraph data structures
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Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages
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Bioconductor/AnnotationHubData
Transform public data resources into Bioconductor Data Structures
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Bioconductor/bioDist
Different distance measures
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Bioconductor/chipseq
chipseq: A package for analyzing chipseq data
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Bioconductor/CoCiteStats
Different test statistics based on co-citation.
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Bioconductor/DynDoc
Dynamic document tools
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Bioconductor/ExperimentHubData
Add resources to ExperimentHub
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Bioconductor/GeneMeta
MetaAnalysis for High Throughput Experiments
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Bioconductor/Icens
NPMLE for Censored and Truncated Data
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Bioconductor/zlibbioc
An R packaged zlib-1.2.5
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