geneplotter contains plotting functions for microarrays
To Do:
o A mechanism to order the rows and columns of the microarray matrix.
order.restricted is a start. We need a mechanism for dendrograms.
Dan Carr suggested that there was a method based on Principle components.
o Links to the annotation library. Using locator(1) we should be able
to simulate interaction with the plot and look up genes at LocusLink
etc.
o Color scheme for Red-Blue is the same as Cheng's but the Red Green still
looks funny.
o Need some notion of a viewport so that we can zoom in and out. Perhaps
Paul Murrell, Ross Ihaka or Saikat DebRoy can help out in this regard.
o Lots of other visualization methods need to be implemented.