Bioconductor

Software for the analysis and comprehension of high-throughput genomic data

Pinned Repositories

BBS
The Bioconductor Build System
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BiocManager
CRAN Package For Managing Bioconductor Packages
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bioconductor.org
Source code for the Bioconductor website
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bioconductor_docker
Docker Containers for Bioconductor
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BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
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Contributions
Contribute Packages to Bioconductor
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CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
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GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
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LearnBioconductor
Training material for introductory R / Bioconductor courses
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pkgrevdocs
Training Material for Community Reviewers
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Bioconductor's Repositories

Bioconductor/basilisk
Clone of the Bioconductor repository for the basilisk package.
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Bioconductor/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
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Bioconductor/VariantAnnotation
Annotation of Genetic Variants
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Bioconductor/TENxBrainData
An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set.
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Bioconductor/LoomExperiment
A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/
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Bioconductor/graph
graph: A package to handle graph data structures
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Bioconductor/GSE62944
Experiment Data Package for TCGA processed RNA-Seq data
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Bioconductor/GSEABase
Gene set enrichment data structures and methods
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Bioconductor/BiocBaseUtils
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Bioconductor/GOstats
Tools for manipulating GO and microarrays.
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Bioconductor/UniProt.ws
R Interface to UniProt Web Services
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Bioconductor/VCFArray
Extension of DelayedArray with on-disk/remote VCF backend
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Bioconductor/geneplotter
Graphics related functions for Bioconductor
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Bioconductor/hca
Human Cell Atlas data discovery and retrieval
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Bioconductor/GenomicFiles
Distributed computing by file or by range
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Bioconductor/RBGL
An interface to the BOOST graph library
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Bioconductor/SQLDataFrame
DataFrame representation of SQL database table
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Bioconductor/basilisk.utils
Clone of the Bioconductor repository for the basilisk.utils package.
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Bioconductor/BiocIO
Standard input / output framework for use by Bioconductor packages
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Bioconductor/bioconductor_salt
Salt to configure Linux and Mac (x86_64, arm64) for the BBS
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Bioconductor/BiocSet
Representing Different Biological Sets
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Bioconductor/BiocVersion
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Bioconductor/DelayedDataFrame
Delayed operation on DataFrame
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Bioconductor/gpls
Classification using generalized partial least squares
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Bioconductor/hypergraph
A package providing hypergraph data structures
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Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages
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Bioconductor/AnVILPublish
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Bioconductor/BiocHubsShiny
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Bioconductor/Icens
NPMLE for Censored and Truncated Data
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Bioconductor/zlibbioc
An R packaged zlib-1.2.5
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