Bioconductor

Software for the analysis and comprehension of high-throughput genomic data

Pinned Repositories

BBS
The Bioconductor Build System
Language:Shell9 16 22011
BiocManager
CRAN Package For Managing Bioconductor Packages
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bioconductor.org
Source code for the Bioconductor website
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bioconductor_docker
Docker Containers for Bioconductor
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BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
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Contributions
Contribute Packages to Bioconductor
135 27 3.7k33
CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
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GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
Language:R85 18 10323
LearnBioconductor
Training material for introductory R / Bioconductor courses
Language:R74 29 035
pkgrevdocs
Training Material for Community Reviewers
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Bioconductor's Repositories

Bioconductor/Contributions
Contribute Packages to Bioconductor
135 27 3.7k33
Bioconductor/BiocParallel
Bioconductor facilities for parallel evaluation
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Bioconductor/GenomicFeatures
Query the gene models of a given organism/assembly
Language:R26 9 6112
Bioconductor/BiocFileCache
Manage Files Across Sessions
Language:R12 8 407
Bioconductor/BiocGenerics
Defines many S4 generic functions used in Bioconductor
Language:R12 17 177
Bioconductor/MatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Language:R12 14 231
Bioconductor/Rhtslib
HTSlib high-throughput sequencing library as an R package
Language:C11 9 3013
Bioconductor/BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Language:R9 13 698
Bioconductor/GenomicAlignments
Representation and manipulation of short genomic alignments
Language:R9 11 2415
Bioconductor/EuroBioC2023
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Bioconductor/AnnotationFilter
Facilities for Filtering Bioconductor Annotation Resources
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Bioconductor/packagebuilder
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Bioconductor/BioconductorAnnotationPipeline
build and push Bioconductor annotation packages
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Bioconductor/BSgenomeForge
Forge your own BSgenome data package
Language:R4 8 253
Bioconductor/Organism.dplyr
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Bioconductor/bioc_mentorship_docs
Training materials for mentors and mentees
Language:TeX2 3 141
Bioconductor/BiocAddins
RStudio Addins from Bioconductor
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Bioconductor/GenomeInfoDbData
GenomeInfoDbData
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Bioconductor/BioC2023
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Bioconductor/bioc_coc_multilingual
Multilingual version of the Bioconductor Code of Conduct
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Bioconductor/pwalign
Perform pairwise sequence alignments
Language:R10
Bioconductor/UCSC.utils
Low-level utilities to retrieve data from the UCSC Genome Browser
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Bioconductor/updateObject
Find/fix old serialized S4 instances
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Bioconductor/Bioc.2bit
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Bioconductor/Ensembl.utils
Low-level utilities to retrieve data from Ensembl
Language:R
Bioconductor/gha-build-jupyter-318
Language:R
Bioconductor/gha-build-rstudio317-amd64
Language:R
Bioconductor/NCBI.utils
Low-level utilities to retrieve data from NCBI
Bioconductor/r2u
Rocker for use with r2u repository
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Bioconductor/spb_history
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