Bioconductor

Software for the analysis and comprehension of high-throughput genomic data

Pinned Repositories

BBS
The Bioconductor Build System
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BiocManager
CRAN Package For Managing Bioconductor Packages
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bioconductor.org
Source code for the Bioconductor website
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bioconductor_docker
Docker Containers for Bioconductor
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BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
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Contributions
Contribute Packages to Bioconductor
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CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
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GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
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LearnBioconductor
Training material for introductory R / Bioconductor courses
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pkgrevdocs
Training Material for Community Reviewers
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Bioconductor's Repositories

Bioconductor/AnnotationHub
Client for the Bioconductor AnnotationHub web resource
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Bioconductor/BiocStyle
Issues and pull requests for BiocStyle should go here.
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Bioconductor/ExperimentHub
Client to access ExperimentHub resources
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Bioconductor/AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
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Bioconductor/Biobase
Biobase: Base functions for Bioconductor
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Bioconductor/ShortRead
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Bioconductor/AnnotationFilter
Facilities for Filtering Bioconductor Annotation Resources
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Bioconductor/HCAMatrixBrowser
:warning: DEPRECATED :warning: Download Matrix Data using the HCA API
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Bioconductor/ISMB.OSCA
OSCA tutorial at the ISMB 2023
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Bioconductor/Organism.dplyr
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Bioconductor/BiocAddins
RStudio Addins from Bioconductor
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Bioconductor/issue_tracker_github
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Bioconductor/SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
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Bioconductor/ZarrExperiment
A package to integrate the zarr format with Biocondcutor's Experiment class
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Bioconductor/BiocVersion
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Bioconductor/2024-07-22-BiocRnaseq-Bioc2024
Bioconductor RNAseq workshop in Grand Rapids, as part of BioC2024
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Bioconductor/2024-09-02-BiocIntro-EuroBioc
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Bioconductor/2024-09-02-RNASeq-EuroBioc
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Bioconductor/BiocArchive
Match the CRAN archive repository with a previous Bioconductor release
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Bioconductor/BiocCertificate
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Bioconductor/BiocPkgStats
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Bioconductor/BiocWorkshopSubmit
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Bioconductor/bioDist
Different distance measures
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Bioconductor/BranchRename
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Bioconductor/conferenceWiki
Centerlized Location for Bioconductor Conference materials, templates, and resources
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Bioconductor/CSAMA_website
Website for CSAMA
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Bioconductor/download_stats
Scripts used for generating the package download stats found at https://bioconductor.org/packages/oldstats/
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Bioconductor/EuroBioC2024
material for the European Bioconductor annual conference 2024
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Bioconductor/ExperimentHubData
Add resources to ExperimentHub
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Bioconductor/galaxy
Data intensive science for everyone.
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