Bioconductor/HDF5Array

Issues

• Interpreting `NATIVE_UINT8` as integer in sparse matrices

  #56 opened a year ago by LTLA
  3

• `H5SparseMatrix` coercion to `dgCmatrix` discards NAs

  #61 opened 10 months ago by LTLA
  0

• installation of package ‘HDF5Array’ had non-zero exit status

  #60 opened 10 months ago by mick42-star
  14

• Object '.replace_dir' not found

  #51 opened a year ago by BBBBunnyZ
  2

• Problem installing HDF5Array on R 4.3.0

  #53 opened a year ago by AndreaRP
  2

• Error with `read_block()` when using `writeHDF5Array()`

  #55 opened a year ago by frederikziebell
  4

• Expose dimension and format options for the H5SparseMatrixSeed constructor

  #54 opened a year ago by LTLA
  3

• Generalizing the H5SparseMatrixSeed class to support other data locations

  #42 opened a year ago by LTLA
  4

• HDF5Array installation issue

  #52 opened 2 years ago by ytakemon
  3

• Feature Request: Support for writing sparse matrices to H5AD files

  #50 opened 2 years ago by mojaveazure
  7

• use TENxMatrix hasn't feature name

  #49 opened 2 years ago by Liripo
  3

• Coerce non-integer shapes into integers in the `H5SparseMatrix` constructor

  #48 opened 2 years ago by LTLA
  2

• Cannot read 10X h5

  #47 opened 3 years ago by ekernf01
  3

• `superclass "DataTable_OR_NULL" not defined` error

  #46 opened 3 years ago by ekernf01
  3

• Direct converters from H5SparseMatrixSeed-containing DelayedMatrix to dgCMatrix

  #45 opened 3 years ago by LTLA
  0

• Loss of sparsity when diving by vector

  #44 opened 3 years ago by const-ae
  2

• Reshape array to Matrix without reading in

  #16 opened 3 years ago by muschellij2
  1

• Warning: no function found corresponding to methods exports from 'HDF5Array' for: 'write_sparse_block'

  #43 opened 3 years ago by DustinSokolowski
  2

• exporting useful internal helper functions

  #38 opened 3 years ago by LiNk-NY
  1

• How to create a huge on-disk array directly from R

  #41 opened 3 years ago by kokitsuyuzaki
  4

• H5ADMatrix objects looking up the wrong names

  #40 opened 3 years ago by LTLA
  7

• Dual matrix seeds for efficient row/column accesses

  #36 opened 3 years ago by LTLA
  7

• H5ADMatrix block processing fails because of the dimnames

  #37 opened 4 years ago by LTLA
  1

• Extending TENxMatrix to work on variants of HDF5-backed storage

  #34 opened 4 years ago by LTLA
  16

• Can't install HDF5Array_1.19.3 in R 4.1.0

  #35 opened 4 years ago by dpelegri
  4

• filepath in HDF5ArraySeed's validity method be extracted with path()?

  #32 opened 4 years ago by LTLA
  1

• Treating dense HDF5Matrices as sparse for greater efficiency

  #33 opened 4 years ago by LTLA
  8

• Migrating beachmat's HDF5-related code to HDF5Array

  #15 opened 4 years ago by LTLA
  11

• reset_h5_location operation?

  #31 opened 4 years ago by vjcitn
  12

• Logical NA converted to FALSE (devel-only) and character NA causing error (devel and release) when constructing HDF5Array

  #28 opened 4 years ago by PeteHaitch
  14

• write_block fails for SparseArraySeed

  #30 opened 4 years ago by LTLA
  1

• [Windows-only] Error realizing matrix with dimnames to HDF5Matrix

  #29 opened 4 years ago by PeteHaitch
  5

• Coercion of large HDF5Matrix to SparseArraySeed fails

  #27 opened 4 years ago by LTLA
  7

• 'type' related error persists with 1yo HDF5SummarizedExperiment

  #25 opened 4 years ago by vjcitn
  1

• taking a single row from a TENxMatrix object is extremely slow

  #26 opened 5 years ago by ccshao
  4

• Can HDF5Array persist the dimnames too?

  #13 opened 5 years ago by phaverty
  3

• Storing raw-Rle with RleArray on a HDF5Array backend

  #23 opened 5 years ago by rcastelo
  7

• Long colnames get truncated

  #24 opened 5 years ago by FelixTheStudent
  3

• Install eror

  #21 opened 5 years ago by kvshams
  4

• The filepath arg of the HDFArray() and TENxMatrix() constructors should accept a Hub ID

  #20 opened 5 years ago by hpages
  0

• HDF5Matrix subsetting loads subset into memory

  #18 opened 5 years ago by avalcarcel9
  4

• Support for contiguous layout HDF5

  #17 opened 5 years ago by soulj
  3

• Can HDF5Matrix and RLEMatrix work together?

  #12 opened 5 years ago by phaverty
  9

• Is it possible to connect to a HDF5 file in a read-only manner?

  #14 opened 5 years ago by phaverty
  2

• Ideas for improvement to saveHDF5SummarizedExperiment()

  #10 opened 6 years ago by PeteHaitch
  5

• Open up API for loadHDF5SummarizedExperiment

  #11 opened 6 years ago by LiNk-NY
  6

• Possible to delay updateObject() in loadHDF5SummarizedExperiment()?

  #9 opened 6 years ago by PeteHaitch
  6

• HDF5Array show method recurses infinitely

  #6 opened 6 years ago by LTLA
  2

• 1.7.6 build error

  #5 opened 7 years ago by pati-ni
  2

• 1.7

  #4 opened 7 years ago by pati-ni
  0