DustinSokolowski
I am a PhD student at the UofT co-supervised by Dr. Goldenberg and Dr. Wilson. I develop and apply bioinformatic tools to analyze sequencing data.
University of TorontoPeter Gilgan Centre for Research and Learning
Pinned Repositories
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
ActiveDriver
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
mitoVGP
The Vertebrate Genomes Project Mitogenome Assembly Pipeline
repeatR_tmp
read and analyse RepeatMasker output
scMappR_Data
Data compatible with scMappR
TOGA
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
nextflow
A DSL for data-driven computational pipelines
DustinSokolowski's Repositories
DustinSokolowski/ActiveDriver
DustinSokolowski/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
DustinSokolowski/mitoVGP
The Vertebrate Genomes Project Mitogenome Assembly Pipeline
DustinSokolowski/repeatR_tmp
read and analyse RepeatMasker output
DustinSokolowski/scMappR_Data
Data compatible with scMappR