chhylp123/hifiasm

Issues

• Mistakenly purge of homozygous seqence in polyploid genome

  #713 opened a month ago by Axolotl233
  4

• Genome typing using both parental short reads and Hic reads

  #723 opened 19 days ago by heziqing
  0

• Understanding the complex topologies of unitigs

  #717 opened 20 days ago by OceanLyu
  2

• Problems with a duplicated region

  #722 opened 20 days ago by LauraSkak
  0

• how to read ec.bin

  #720 opened 20 days ago by jetrz
  4

• hifiasm using about gametophyte of fern

  #718 opened 23 days ago by guoshanf
  2

• Illegal instruction (core dumped)

  #721 opened 20 days ago by paulkim194
  0

• max length seems too long

  #719 opened 23 days ago by Xoey0314
  1

• Core dump related to usage -5 parameter

  #684 opened a month ago by rfinkers
  7

• Usage with desbalanced haplotypes

  #715 opened a month ago by trn30
  2

• Hifiasm with Ultralong_ONT

  #716 opened a month ago by handesome
  1

• Job keeps failing due to time limit of 7 days enforced by cluster.

  #712 opened 2 months ago by JohnUrban
  2

• --primary/-l0 option

  #711 opened 2 months ago by Rhia15
  4

• Trio binning with long reads parents

  #714 opened a month ago by jeffchen2000
  1

• Change ptg*****l to ptg*****L.

  #703 opened 3 months ago by xiekunwhy
  1

• Abnormal k-mer Frequencies in Hybrid Assemblies Using Hifiasm Version 0.19.9

  #710 opened 2 months ago by alex-kozik
  0

• Tetraploid with high heterozygosity

  #708 opened 2 months ago by Liyong-Zhang
  1

• Trio binning - high error rates and significant assembly size differences

  #709 opened 2 months ago by BrianSmart
  0

• Telo option

  #693 opened 3 months ago by aabaricalla
  1

• Missing and Duplicated Buscos in diploid haplotype-resolved assemblies

  #707 opened 2 months ago by kbarslan
  0

• a third of the hifi reads not present in gfa

  #706 opened 2 months ago by zhenzhenyang-psu
  0

• About running hifiasm

  #683 opened 4 months ago by qinPX
  1

• Discard the output file reads *.ec.fa

  #705 opened 2 months ago by pailloufat-stack
  0

• KMer Count is very skewed towards the beginning

  #704 opened 2 months ago by Furkan9015
  0

• issues with memory usage

  #686 opened 3 months ago by LaurenHuet
  0

• large and discontinuous assembly results using only HiFi sequencing data

  #702 opened 3 months ago by biozzq
  0

• het peak -1 and second peak on kmer distribution plot missing

  #697 opened 3 months ago by desa-la
  3

• How to further improve the busco completeness?

  #701 opened 3 months ago by oddguyeee
  0

• hifiasm log file

  #700 opened 3 months ago by Samyuktha9624
  0

• How to deal with extremely high mapping rate?

  #699 opened 3 months ago by oddguyeee
  3

• How to deal with extremely high mapping rate?

  #698 opened 3 months ago by oddguyeee
  0

• How to replace a consensus reference with either haplotypes after asm?

  #696 opened 3 months ago by Isoris
  0

• Clarification on the post-join step

  #695 opened 3 months ago by diego-rt
  0

• Clarification on hifiasm (HiC)

  #694 opened 3 months ago by JHCCoder
  0

• Use p_ctg.fa and a_ctg.fa to fill the gaps of hap1.fa and hap2.fa?

  #692 opened 3 months ago by DayTimeMouse
  0

• Bus error problem

  #691 opened 3 months ago by chywish
  0

• different size for diploid organisms with low heterozygosity levels

  #690 opened 3 months ago by Overcraft90
  0

• Question regarding quality threshold for PacBio and ONT assembly

  #689 opened 4 months ago by s-t-calus
  0

• Recommendations for HiFi Data Depth in Haplotypic and Polyploid Assemblies

  #688 opened 4 months ago by WangZhSi
  0

• Which does GFA file contain sex chromosome derived sequences?

  #687 opened 4 months ago by Jung19911124
  0

• Incomplete haplotype-level assembly with hic

  #685 opened 4 months ago by dandanWang2019
  0

• Cannot run on HPC with older ubuntu version.

  #679 opened 4 months ago by ap1438
  1

• how to estimate the homo-coverage for captured HiFi sequencing data

  #682 opened 4 months ago by wangBiojin
  0

• Confused about large contigs with 'c' suffix during fungal genome assembly

  #681 opened 4 months ago by Hanjiangna
  0

• Thoughts on using parental Hi-C reads for trio-binning?

  #680 opened 4 months ago by tzxiong
  0

• Different size of hap1 and hap2

  #678 opened 4 months ago by shehongbing
  0

• Potential Translocation Assembly

  #676 opened 4 months ago by YutingSheep
  1

• Hifiasm assembly results and run log issues

  #677 opened 5 months ago by majssssa
  0

• Question about the -5 parameter

  #675 opened 5 months ago by Iven-gif
  0

• chimeras in long SSRs

  #674 opened 5 months ago by kevfengler227
  0