Pinned Repositories
arcPlot
Code for plotting arcs
bcd_nano_CUTnTag
Multimodal chromatin analysis workflow
comrades
A program for folding RNA using constraints from proximity ligation experiments
comradesOO
The Analysis of COMRADES data for RNA structure prediction
CRSSANT
Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
DanceMapper
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
hyb
hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
longread_umi
Demultiplexing of dual-UMI barcodes
RingMapper
Code for performing RING-MaP and PAIR-MaP analysis
s-t-calus's Repositories
s-t-calus/hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
s-t-calus/bcd_nano_CUTnTag
Multimodal chromatin analysis workflow
s-t-calus/RingMapper
Code for performing RING-MaP and PAIR-MaP analysis
s-t-calus/RNAFramework
RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
s-t-calus/DanceMapper
s-t-calus/arcPlot
Code for plotting arcs
s-t-calus/CRSSANT
Package for analyzing RNA crosslinking and proximity ligation data (PARIS and beyond)
s-t-calus/comradesOO
The Analysis of COMRADES data for RNA structure prediction
s-t-calus/RNAnue
RNAnue
s-t-calus/structural_motifs
s-t-calus/longread_umi
Demultiplexing of dual-UMI barcodes
s-t-calus/comrades
A program for folding RNA using constraints from proximity ligation experiments
s-t-calus/hyb
hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
s-t-calus/splishSPLASH
Software to analyse RNA:RNA interactome data from high-throughput sequencing experiments (SPLASH, COMRADES, PARIS, LIGR-seq)
s-t-calus/Szymon