Pinned Repositories
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
Analysis_of_CD_Studies
copied from heartIncrna_The pipelines use for RNA-seq data analysis of Crohn disease patients compared to the healthy donors.
biostar-central
Biostar Q&A
bootcamp-central
PSU bootcamp on reproducible research
cactus-guide-2.0
Up to date guide of running genome aligner CACTUS (last edit - 01/09/2020)
cs280
test
Cuscuta_HGT_ms_code
pipeline and code associated with the ms on Cuscuta HGT
DipAsm
HGT_PNAS_manuscript
This folder contains the scripts, orthogroup alignments and trees linked to the HGT manuscript in PNAS.
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
zhenzhenyang-psu's Repositories
zhenzhenyang-psu/ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
zhenzhenyang-psu/Analysis_of_CD_Studies
copied from heartIncrna_The pipelines use for RNA-seq data analysis of Crohn disease patients compared to the healthy donors.
zhenzhenyang-psu/biostar-central
Biostar Q&A
zhenzhenyang-psu/bootcamp-central
PSU bootcamp on reproducible research
zhenzhenyang-psu/cactus-guide-2.0
Up to date guide of running genome aligner CACTUS (last edit - 01/09/2020)
zhenzhenyang-psu/cs280
test
zhenzhenyang-psu/Cuscuta_HGT_ms_code
pipeline and code associated with the ms on Cuscuta HGT
zhenzhenyang-psu/DipAsm
zhenzhenyang-psu/HGT_PNAS_manuscript
This folder contains the scripts, orthogroup alignments and trees linked to the HGT manuscript in PNAS.
zhenzhenyang-psu/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
zhenzhenyang-psu/Phylogenomics
zhenzhenyang-psu/smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
zhenzhenyang-psu/testRepo
zhenzhenyang-psu/UCSC_add_track